Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GII77_RS04060 Genome accession   NZ_CP045825
Coordinates   774926..776056 (+) Length   376 a.a.
NCBI ID   WP_015252625.1    Uniprot ID   -
Organism   Bacillus subtilis strain 75     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 769926..781056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS04045 (GII77_04045) - 771762..772769 (+) 1008 WP_044052609.1 hypothetical protein -
  GII77_RS04050 (GII77_04050) - 772982..773419 (+) 438 WP_015252628.1 hypothetical protein -
  GII77_RS21620 - 773621..774319 (+) 699 WP_015252627.1 hypothetical protein -
  GII77_RS21625 - 774319..774780 (+) 462 WP_015252626.1 lysozyme inhibitor LprI family protein -
  GII77_RS04060 (GII77_04060) rapC 774926..776056 (+) 1131 WP_015252625.1 response regulator aspartate phosphatase RapH Regulator
  GII77_RS04065 (GII77_04065) phrH 776046..776219 (+) 174 WP_044052608.1 phosphatase RapH inhibitor PhrH -
  GII77_RS04070 (GII77_04070) yeeI 776379..777098 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GII77_RS04075 (GII77_04075) yeeK 777232..777672 (+) 441 WP_015252624.1 spore coat protein YeeK -
  GII77_RS04080 (GII77_04080) yezE 777789..778373 (+) 585 WP_015252623.1 TetR/AcrR family transcriptional regulator -
  GII77_RS04085 (GII77_04085) yesE 778452..778895 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  GII77_RS04090 (GII77_04090) yesF 778892..779757 (+) 866 Protein_762 NAD-dependent epimerase/dehydratase family protein -
  GII77_RS04095 (GII77_04095) cotJA 779886..780134 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  GII77_RS04100 (GII77_04100) cotJB 780118..780381 (+) 264 WP_003219491.1 spore coat protein CotJB -
  GII77_RS04105 (GII77_04105) cotJC 780396..780965 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43934.22 Da        Isoelectric Point: 5.7360

>NTDB_id=347825 GII77_RS04060 WP_015252625.1 774926..776056(+) (rapC) [Bacillus subtilis strain 75]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALDLAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYRELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=347825 GII77_RS04060 WP_015252625.1 774926..776056(+) (rapC) [Bacillus subtilis strain 75]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCTGGACAAACATACGGAAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTAGATTTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ATAAATTTTATAGAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTGTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTTTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396