Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   GII77_RS02465 Genome accession   NZ_CP045825
Coordinates   480853..481287 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain 75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 475853..486287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS02435 (GII77_02435) ydaD 476501..477361 (+) 861 WP_015252798.1 SDR family oxidoreductase -
  GII77_RS02440 (GII77_02440) lyxE 477377..477880 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  GII77_RS02445 (GII77_02445) ydaF 477968..478519 (+) 552 WP_015252797.1 GNAT family protein -
  GII77_RS02450 (GII77_02450) ydaG 478597..479019 (+) 423 WP_015252796.1 pyridoxamine 5'-phosphate oxidase family protein -
  GII77_RS02455 (GII77_02455) amj 479525..480334 (+) 810 WP_015252795.1 lipid II flippase Amj -
  GII77_RS02460 (GII77_02460) ydzA 480378..480668 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  GII77_RS02465 (GII77_02465) lrpC 480853..481287 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  GII77_RS02470 (GII77_02470) topB 481352..483535 (+) 2184 WP_015252793.1 DNA topoisomerase III -
  GII77_RS02475 (GII77_02475) ephJ 483737..484825 (+) 1089 WP_015252792.1 hypothetical protein -
  GII77_RS02480 (GII77_02480) epsK 484806..485657 (+) 852 WP_015252791.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=347822 GII77_RS02465 WP_003246585.1 480853..481287(+) (lrpC) [Bacillus subtilis strain 75]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=347822 GII77_RS02465 WP_003246585.1 480853..481287(+) (lrpC) [Bacillus subtilis strain 75]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1