Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GII78_RS21335 Genome accession   NZ_CP045824
Coordinates   4087231..4087920 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain MB8_B10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4082231..4092920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS21315 (GII78_21315) yxeA 4083136..4083483 (-) 348 WP_003227084.1 YxeA family protein -
  GII78_RS21320 (GII78_21320) yxdM 4083497..4085365 (-) 1869 WP_029318589.1 ABC transporter permease YxdM -
  GII78_RS21325 (GII78_21325) yxdL 4085340..4086113 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  GII78_RS21330 (GII78_21330) yxdK 4086257..4087234 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  GII78_RS21335 (GII78_21335) braR 4087231..4087920 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  GII78_RS21340 (GII78_21340) iolJ 4088028..4088900 (-) 873 WP_103031280.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  GII78_RS21345 (GII78_21345) iolI 4088921..4089757 (-) 837 WP_003227070.1 2-keto-myo-inositol isomerase -
  GII78_RS21350 (GII78_21350) iolH 4089843..4090712 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  GII78_RS21355 (GII78_21355) iolG 4090732..4091766 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=347793 GII78_RS21335 WP_003243527.1 4087231..4087920(-) (braR) [Bacillus subtilis strain MB8_B10]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=347793 GII78_RS21335 WP_003243527.1 4087231..4087920(-) (braR) [Bacillus subtilis strain MB8_B10]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406