Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   GII78_RS12460 Genome accession   NZ_CP045824
Coordinates   2404357..2405847 (-) Length   496 a.a.
NCBI ID   WP_069703891.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2399357..2410847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS12430 (GII78_12430) gudB 2399495..2400769 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  GII78_RS12435 (GII78_12435) mecB 2400925..2401509 (-) 585 WP_003230533.1 genetic competence negative regulator -
  GII78_RS12440 (GII78_12440) ypbG 2401668..2402447 (-) 780 WP_003230532.1 metallophosphoesterase -
  GII78_RS12445 (GII78_12445) ypbF 2402534..2402977 (-) 444 WP_003230531.1 YpbF family protein -
  GII78_RS12450 (GII78_12450) claE 2403040..2403777 (-) 738 WP_069703892.1 LysM peptidoglycan-binding domain-containing protein -
  GII78_RS12455 (GII78_12455) ypbD 2403728..2404330 (-) 603 WP_003230529.1 CPBP family intramembrane glutamic endopeptidase -
  GII78_RS12460 (GII78_12460) recS 2404357..2405847 (-) 1491 WP_069703891.1 ATP-dependent DNA helicase RecQ Machinery gene
  GII78_RS12465 (GII78_12465) gmmB 2405840..2406898 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  GII78_RS12470 (GII78_12470) fdxA 2407164..2407412 (+) 249 WP_003225461.1 ferredoxin -
  GII78_RS12475 (GII78_12475) fmnP 2407451..2408023 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  GII78_RS12480 (GII78_12480) serA 2408520..2410097 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56580.13 Da        Isoelectric Point: 6.4518

>NTDB_id=347730 GII78_RS12460 WP_069703891.1 2404357..2405847(-) (recS) [Bacillus subtilis strain MB8_B10]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHQYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPRDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=347730 GII78_RS12460 WP_069703891.1 2404357..2405847(-) (recS) [Bacillus subtilis strain MB8_B10]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAGGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCAATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACTCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCATCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGTGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAAGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994