Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GII78_RS06710 Genome accession   NZ_CP045824
Coordinates   1295963..1297099 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290963..1302099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS06690 (GII78_06690) uxaA 1291413..1292906 (+) 1494 WP_003232744.1 altronate dehydratase family protein -
  GII78_RS06695 (GII78_06695) yjnA 1292945..1293709 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  GII78_RS06700 (GII78_06700) bstD 1293934..1294398 (-) 465 WP_014479541.1 DinB family protein -
  GII78_RS06705 (GII78_06705) yjoB 1294547..1295818 (+) 1272 WP_003232739.1 ATPase YjoB -
  GII78_RS06710 (GII78_06710) rapC 1295963..1297099 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  GII78_RS06715 (GII78_06715) phrA 1297089..1297223 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  GII78_RS06720 (GII78_06720) yjpA 1297253..1297510 (-) 258 WP_003232731.1 YciI family protein -
  GII78_RS06725 (GII78_06725) xlyB 1297631..1298584 (+) 954 WP_032677396.1 N-acetylmuramoyl-L-alanine amidase -
  GII78_RS06730 (GII78_06730) yjqA 1298624..1299001 (-) 378 WP_014479546.1 PH domain-containing protein -
  GII78_RS06735 (GII78_06735) pghB 1299107..1299709 (+) 603 WP_003232725.1 poly-gamma-glutamate hydrolase family protein -
  GII78_RS06740 (GII78_06740) xpdC 1299786..1300622 (+) 837 WP_003245071.1 manganese catalase family protein -
  GII78_RS06745 (GII78_06745) xkdA 1300679..1301275 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  GII78_RS06750 (GII78_06750) xre 1301438..1301779 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=347699 GII78_RS06710 WP_015252291.1 1295963..1297099(+) (rapC) [Bacillus subtilis strain MB8_B10]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=347699 GII78_RS06710 WP_015252291.1 1295963..1297099(+) (rapC) [Bacillus subtilis strain MB8_B10]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418