Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EYR26_RS17260 Genome accession   NZ_CP036253
Coordinates   3656992..3658386 (+) Length   464 a.a.
NCBI ID   WP_053502738.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain NCPPB4346     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651992..3663386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYR26_RS17240 (EYR26_17240) - 3652129..3652425 (-) 297 WP_131074743.1 hypothetical protein -
  EYR26_RS17245 (EYR26_17245) sucD 3652745..3653620 (-) 876 WP_019300808.1 succinate--CoA ligase subunit alpha -
  EYR26_RS17250 (EYR26_17250) sucC 3653645..3654814 (-) 1170 WP_019300809.1 ADP-forming succinate--CoA ligase subunit beta -
  EYR26_RS17255 (EYR26_17255) - 3655048..3656661 (+) 1614 WP_053502740.1 HAMP domain-containing sensor histidine kinase -
  EYR26_RS17260 (EYR26_17260) pilR 3656992..3658386 (+) 1395 WP_053502738.1 sigma-54 dependent transcriptional regulator Regulator
  EYR26_RS17265 (EYR26_17265) - 3658383..3658904 (+) 522 WP_207306797.1 Fic family protein -
  EYR26_RS17270 (EYR26_17270) pilB 3658913..3660646 (-) 1734 WP_053502736.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYR26_RS17275 (EYR26_17275) - 3660681..3662207 (-) 1527 WP_053502734.1 hypothetical protein -
  EYR26_RS17280 (EYR26_17280) - 3662177..3662752 (-) 576 WP_243735467.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50247.69 Da        Isoelectric Point: 6.3793

>NTDB_id=347673 EYR26_RS17260 WP_053502738.1 3656992..3658386(+) (pilR) [Xanthomonas oryzae strain NCPPB4346]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQCARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGELVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=347673 EYR26_RS17260 WP_053502738.1 3656992..3658386(+) (pilR) [Xanthomonas oryzae strain NCPPB4346]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATTGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAATGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGAGCTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment