Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GII79_RS21220 Genome accession   NZ_CP045823
Coordinates   4078531..4079220 (-) Length   229 a.a.
NCBI ID   WP_029318588.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4073531..4084220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII79_RS21200 (GII79_21200) yxeA 4074436..4074783 (-) 348 WP_003227084.1 YxeA family protein -
  GII79_RS21205 (GII79_21205) yxdM 4074797..4076665 (-) 1869 WP_003227080.1 ABC transporter permease YxdM -
  GII79_RS21210 (GII79_21210) yxdL 4076640..4077413 (-) 774 WP_032676945.1 ABC transporter ATP-binding protein YxdL -
  GII79_RS21215 (GII79_21215) yxdK 4077557..4078534 (-) 978 WP_003227076.1 two-component system sensor histidine kinase YxdK -
  GII79_RS21220 (GII79_21220) braR 4078531..4079220 (-) 690 WP_029318588.1 two-component system response regulator YxdJ Regulator
  GII79_RS21225 (GII79_21225) iolJ 4079328..4080200 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  GII79_RS21230 (GII79_21230) iolI 4080221..4081057 (-) 837 WP_003227070.1 2-keto-myo-inositol isomerase -
  GII79_RS21235 (GII79_21235) iolH 4081143..4082012 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  GII79_RS21240 (GII79_21240) iolG 4082032..4083066 (-) 1035 WP_003227066.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26584.38 Da        Isoelectric Point: 4.9502

>NTDB_id=347640 GII79_RS21220 WP_029318588.1 4078531..4079220(-) (braR) [Bacillus subtilis strain MB8_B1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSLLSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=347640 GII79_RS21220 WP_029318588.1 4078531..4079220(-) (braR) [Bacillus subtilis strain MB8_B1]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGTGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCTTGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment