Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   APORC_RS03180 Genome accession   NZ_CP036246
Coordinates   595687..597543 (-) Length   618 a.a.
NCBI ID   WP_066173283.1    Uniprot ID   A0A5C2HBE1
Organism   Arcobacter porcinus strain CCUG 56899     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590687..602543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APORC_RS03165 (APORC_0634) - 591175..592338 (-) 1164 WP_066387405.1 MalY/PatB family protein -
  APORC_RS03170 (APORC_0635) - 592352..594601 (-) 2250 WP_066173277.1 methyl-accepting chemotaxis protein -
  APORC_RS03175 (APORC_0636) - 594684..595709 (-) 1026 WP_066178947.1 alanine racemase -
  APORC_RS03180 (APORC_0637) uvrC 595687..597543 (-) 1857 WP_066173283.1 excinuclease ABC subunit UvrC Machinery gene
  APORC_RS03185 (APORC_0638) - 597695..600109 (+) 2415 WP_083199969.1 methyl-accepting chemotaxis protein -
  APORC_RS03190 (APORC_0639) - 600224..601651 (+) 1428 WP_066178941.1 catalase -
  APORC_RS03195 (APORC_0640) - 601653..602129 (+) 477 WP_066178938.1 ankyrin repeat domain-containing protein -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 72147.33 Da        Isoelectric Point: 8.4255

>NTDB_id=347572 APORC_RS03180 WP_066173283.1 595687..597543(-) (uvrC) [Arcobacter porcinus strain CCUG 56899]
MNLEEKLKQLPNQAGVYQYFDQNGDLLYIGKAKNLKNRVKSYFRFTPNLEANNDLSPRIFKMINETISLEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIIPLVQKKSC
IRSNKACLFFQIGKCLAPCEGKIDKNDYKKLLDEALVYIYSKSKLINKLKEKMEFYSNEFRFEDALNLRDRIKTIEKSQI
KTAIDLATNEDLDLFAIKSHLKKAVLVRMFIRDGKLASSNYDFIKMGSDLEFDLEEAYKRAIVNYYSNELPIVPKEILIA
DEILELEDIEDFLQEKFNKKIKILNPKIDKKASIVKIALNNCDELLRLENIKDENSIYSEIEKLFSLKTTPSYIEVFDNS
HFMGQATVGGMIVWDKELESFNKKEYRHYNLESLDEYSQMKEVLYRRVESFSKNSPPDLWIIDGGTTLLKLAFDIVSSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFKQNGEIKSLTLLPSDKRLQFIQRLRDEAHRFAISFHKKQKRKEDKEISLL
QIKGIGEAKIKKLLLYFGEFEKIRDANFEELKTVLNEKDAENLMEYFTKERSGEDLTR

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=347572 APORC_RS03180 WP_066173283.1 595687..597543(-) (uvrC) [Arcobacter porcinus strain CCUG 56899]
ATGAATTTAGAAGAAAAATTAAAACAACTTCCTAATCAAGCAGGAGTTTATCAATACTTTGATCAAAATGGAGATCTTTT
ATATATTGGAAAAGCAAAAAATCTAAAAAATAGAGTTAAAAGCTATTTCAGGTTTACTCCTAACTTAGAAGCAAACAATG
ATTTAAGTCCAAGAATTTTTAAAATGATTAATGAAACAATCTCTTTAGAGTGGATTGTTGTTCCAAATGAGCATGATGCT
TTGATTTTAGAAAATTCATTAATCAAACAACTAAAACCAAAGTACAATGTTTTATTAAGAGATGATAAAACTTATCCTTA
TATTTATGTTGATTTAAATGAAGACTTTCCAAGACTTGAAATCACTAGAAAAATTGAAAAAGGTAAAAATATAAAATATT
TTGGTCCATATTCAAGTGGTGCAAAAGATATGCTTGATAGTATTTATGAAATTATTCCTTTAGTACAAAAAAAATCTTGT
ATAAGATCAAATAAAGCTTGTCTTTTTTTTCAAATTGGAAAATGTCTAGCACCTTGTGAAGGAAAAATTGATAAAAATGA
TTATAAAAAGCTTTTAGATGAAGCATTAGTATATATTTATAGTAAATCAAAACTTATAAATAAACTAAAAGAAAAGATGG
AGTTTTATTCAAATGAGTTTAGATTTGAAGATGCTTTAAATCTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATC
AAAACAGCTATTGATTTGGCTACGAATGAAGATTTAGATCTTTTTGCTATAAAAAGTCATTTAAAAAAAGCTGTATTAGT
AAGAATGTTTATAAGAGATGGAAAACTTGCATCTTCTAACTATGATTTTATAAAAATGGGATCTGATTTAGAGTTTGATT
TAGAAGAAGCTTATAAAAGAGCTATTGTAAACTATTACTCAAATGAACTTCCTATTGTTCCAAAAGAGATTTTAATAGCA
GATGAGATTTTAGAACTTGAAGATATAGAGGATTTTTTACAAGAAAAGTTTAATAAGAAAATTAAAATTTTAAATCCAAA
AATTGATAAAAAAGCCTCTATTGTGAAAATTGCTTTAAACAATTGTGATGAATTATTAAGACTTGAAAATATAAAAGATG
AAAATAGTATTTATAGTGAAATAGAGAAGCTATTTTCTTTAAAAACTACTCCAAGCTATATTGAAGTGTTTGATAACTCT
CATTTTATGGGACAAGCAACAGTTGGTGGAATGATTGTTTGGGATAAAGAGCTTGAAAGTTTTAATAAAAAAGAGTACAG
ACATTATAATCTTGAAAGTCTTGATGAATACTCTCAGATGAAAGAGGTTTTATATAGAAGAGTTGAAAGTTTTTCTAAAA
ATAGTCCTCCAGATTTATGGATAATTGATGGAGGAACAACTCTATTAAAACTCGCTTTTGACATAGTTTCTTCTATTGGG
GTAAATTTAGATATTATTGCAATTTCTAAGCAAAAAGTTGATGCAAAAGCTTATAGAGCAAAAGGAAATGCAAAAGATAT
TGTTCATTTTAAGCAAAATGGCGAAATAAAAAGTTTAACTCTTCTTCCTAGCGATAAAAGATTACAATTTATTCAAAGAT
TAAGAGATGAAGCACATAGATTTGCTATAAGTTTTCATAAAAAACAGAAAAGAAAAGAGGATAAAGAGATTTCACTCCTA
CAAATAAAAGGTATTGGTGAAGCAAAAATCAAAAAACTTTTACTCTATTTTGGAGAGTTTGAGAAAATAAGAGATGCAAA
TTTTGAAGAGTTAAAAACTGTTTTAAATGAAAAAGATGCAGAAAACCTGATGGAATATTTTACAAAGGAAAGAAGTGGCG
AAGATCTTACTAGATAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(14-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C2HBE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.252

96.926

0.497

Multiple sequence alignment