Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   GII79_RS09030 Genome accession   NZ_CP045823
Coordinates   1742072..1742503 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain MB8_B1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737072..1747503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII79_RS09010 (GII79_09010) spoVS 1737633..1737893 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  GII79_RS09015 (GII79_09015) tdh 1738159..1739202 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  GII79_RS09020 (GII79_09020) kbl 1739215..1740393 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  GII79_RS09025 (GII79_09025) miaB 1740541..1742070 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GII79_RS09030 (GII79_09030) ymcA 1742072..1742503 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  GII79_RS09035 (GII79_09035) cotE 1742765..1743310 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  GII79_RS09040 (GII79_09040) hexA 1743443..1746019 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=347567 GII79_RS09030 WP_003231834.1 1742072..1742503(+) (ymcA) [Bacillus subtilis strain MB8_B1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=347567 GII79_RS09030 WP_003231834.1 1742072..1742503(+) (ymcA) [Bacillus subtilis strain MB8_B1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1