Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | EXU30_RS05355 | Genome accession | NZ_CP036200 |
| Coordinates | 1273988..1275349 (-) | Length | 453 a.a. |
| NCBI ID | WP_130598162.1 | Uniprot ID | A0A411PFM6 |
| Organism | Shewanella maritima strain D4-2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1268988..1280349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXU30_RS05345 (EXU30_05345) | - | 1269744..1273451 (+) | 3708 | WP_130598160.1 | two-component regulator propeller domain-containing protein | - |
| EXU30_RS05350 (EXU30_05350) | - | 1273501..1273872 (+) | 372 | WP_130598161.1 | PilZ domain-containing protein | - |
| EXU30_RS05355 (EXU30_05355) | radA | 1273988..1275349 (-) | 1362 | WP_130598162.1 | DNA repair protein RadA | Machinery gene |
| EXU30_RS05360 (EXU30_05360) | - | 1275515..1277890 (+) | 2376 | WP_130598163.1 | PilZ domain-containing protein | - |
| EXU30_RS05365 (EXU30_05365) | - | 1277945..1278862 (-) | 918 | WP_130598164.1 | alpha/beta hydrolase | - |
| EXU30_RS05370 (EXU30_05370) | serB | 1279007..1279900 (-) | 894 | WP_242620392.1 | phosphoserine phosphatase SerB | - |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 48906.27 Da Isoelectric Point: 6.8669
>NTDB_id=347501 EXU30_RS05355 WP_130598162.1 1273988..1275349(-) (radA) [Shewanella maritima strain D4-2]
MAKNKTAYVCNECGQDFPRWQGQCSACNEWNTITEVRLGSSSAKRTHQFSGYAGQTSNHVQTLDQIDLSELPRIASSFGE
FDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCQLSESMNALYVTGEESLQQVAMRAHRLGLPTQKLRMLSETSVEAIC
DIALNEKPKIMVVDSIQVMHMADIQSSPGSVSQVRESASYLTRFAKQQGIAVIMVGHVTKDGSLAGPKVLEHCIDCSVMF
EGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSREEASSGSLVMVVWEGTRPLLVELQVLVDNSAMA
NPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVNVVGGVKVSETSADLTLLLAMVSSFRGEIMSPELVVFGEVGLSG
EIRPVPNGQERLIEAAKHGFKRAIVPKANMPKKAPEGMEVIGVTKLAQALEAL
MAKNKTAYVCNECGQDFPRWQGQCSACNEWNTITEVRLGSSSAKRTHQFSGYAGQTSNHVQTLDQIDLSELPRIASSFGE
FDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCQLSESMNALYVTGEESLQQVAMRAHRLGLPTQKLRMLSETSVEAIC
DIALNEKPKIMVVDSIQVMHMADIQSSPGSVSQVRESASYLTRFAKQQGIAVIMVGHVTKDGSLAGPKVLEHCIDCSVMF
EGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSREEASSGSLVMVVWEGTRPLLVELQVLVDNSAMA
NPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVNVVGGVKVSETSADLTLLLAMVSSFRGEIMSPELVVFGEVGLSG
EIRPVPNGQERLIEAAKHGFKRAIVPKANMPKKAPEGMEVIGVTKLAQALEAL
Nucleotide
Download Length: 1362 bp
>NTDB_id=347501 EXU30_RS05355 WP_130598162.1 1273988..1275349(-) (radA) [Shewanella maritima strain D4-2]
ATGGCAAAAAATAAGACCGCATACGTTTGTAATGAGTGTGGACAAGACTTTCCCCGCTGGCAAGGTCAATGTAGCGCATG
TAACGAGTGGAATACGATTACCGAAGTACGTTTAGGCAGCTCAAGCGCGAAGCGTACTCATCAATTTTCTGGCTATGCAG
GGCAAACCAGTAATCACGTACAAACCTTAGATCAAATTGACTTGTCTGAGCTGCCGCGTATTGCCAGTAGCTTTGGCGAG
TTCGACAGAGTGCTTGGTGGTGGTATTGTGCCAGGCAGCGCGATTTTAATTGGTGGTCATCCTGGCGCCGGTAAAAGTAC
CTTGCTACTGCAAACCCTGTGTCAGTTATCCGAGTCGATGAATGCACTGTACGTAACGGGTGAGGAGTCACTGCAACAGG
TCGCCATGCGCGCTCACCGATTAGGACTGCCAACACAAAAACTTCGCATGCTCTCTGAGACTTCGGTAGAAGCTATTTGC
GATATTGCCTTAAATGAAAAGCCAAAAATTATGGTGGTGGACTCGATTCAGGTAATGCATATGGCTGATATTCAGTCTTC
ACCTGGCAGTGTGTCTCAGGTGCGGGAGTCGGCGTCGTATTTAACGCGCTTTGCTAAGCAGCAGGGCATTGCGGTGATTA
TGGTGGGCCATGTTACTAAAGATGGTAGCTTAGCTGGTCCTAAAGTGTTGGAGCACTGTATTGACTGCTCGGTGATGTTT
GAAGGCGATAGTGATAGTCGCTATCGCACCTTACGCTCACATAAAAACCGTTTTGGTGCGATCAACGAGCTAGGTGTATT
TGCCATGACCGAGCGTGGTTTAAAAGAAGTGGCGAATCCGTCGGCAATTTTTTTGTCTCGCGAGGAGGCAAGCTCTGGCT
CATTGGTGATGGTTGTGTGGGAAGGCACGCGCCCTTTGTTGGTGGAATTGCAGGTACTTGTGGATAATTCCGCCATGGCG
AACCCGCGCCGGGTTGCAGTTGGTATGGATGCTAACCGCTTAGCGATGTTGCTTGCGGTTATGCATCGTCACGGTGGCTT
GCAAATGTCAGATCAAGACGTATTCGTCAACGTGGTCGGCGGCGTTAAAGTCAGCGAAACCAGTGCGGACTTAACCTTGT
TGTTAGCTATGGTTTCAAGCTTTCGTGGTGAGATTATGTCACCTGAGCTAGTGGTATTTGGTGAGGTGGGGTTGTCTGGC
GAGATTAGGCCTGTGCCGAATGGGCAGGAGCGTTTGATTGAGGCGGCTAAGCATGGCTTTAAACGTGCGATTGTCCCTAA
AGCGAATATGCCAAAAAAAGCGCCAGAGGGCATGGAAGTGATAGGTGTGACTAAATTAGCTCAAGCATTAGAAGCGTTAT
AA
ATGGCAAAAAATAAGACCGCATACGTTTGTAATGAGTGTGGACAAGACTTTCCCCGCTGGCAAGGTCAATGTAGCGCATG
TAACGAGTGGAATACGATTACCGAAGTACGTTTAGGCAGCTCAAGCGCGAAGCGTACTCATCAATTTTCTGGCTATGCAG
GGCAAACCAGTAATCACGTACAAACCTTAGATCAAATTGACTTGTCTGAGCTGCCGCGTATTGCCAGTAGCTTTGGCGAG
TTCGACAGAGTGCTTGGTGGTGGTATTGTGCCAGGCAGCGCGATTTTAATTGGTGGTCATCCTGGCGCCGGTAAAAGTAC
CTTGCTACTGCAAACCCTGTGTCAGTTATCCGAGTCGATGAATGCACTGTACGTAACGGGTGAGGAGTCACTGCAACAGG
TCGCCATGCGCGCTCACCGATTAGGACTGCCAACACAAAAACTTCGCATGCTCTCTGAGACTTCGGTAGAAGCTATTTGC
GATATTGCCTTAAATGAAAAGCCAAAAATTATGGTGGTGGACTCGATTCAGGTAATGCATATGGCTGATATTCAGTCTTC
ACCTGGCAGTGTGTCTCAGGTGCGGGAGTCGGCGTCGTATTTAACGCGCTTTGCTAAGCAGCAGGGCATTGCGGTGATTA
TGGTGGGCCATGTTACTAAAGATGGTAGCTTAGCTGGTCCTAAAGTGTTGGAGCACTGTATTGACTGCTCGGTGATGTTT
GAAGGCGATAGTGATAGTCGCTATCGCACCTTACGCTCACATAAAAACCGTTTTGGTGCGATCAACGAGCTAGGTGTATT
TGCCATGACCGAGCGTGGTTTAAAAGAAGTGGCGAATCCGTCGGCAATTTTTTTGTCTCGCGAGGAGGCAAGCTCTGGCT
CATTGGTGATGGTTGTGTGGGAAGGCACGCGCCCTTTGTTGGTGGAATTGCAGGTACTTGTGGATAATTCCGCCATGGCG
AACCCGCGCCGGGTTGCAGTTGGTATGGATGCTAACCGCTTAGCGATGTTGCTTGCGGTTATGCATCGTCACGGTGGCTT
GCAAATGTCAGATCAAGACGTATTCGTCAACGTGGTCGGCGGCGTTAAAGTCAGCGAAACCAGTGCGGACTTAACCTTGT
TGTTAGCTATGGTTTCAAGCTTTCGTGGTGAGATTATGTCACCTGAGCTAGTGGTATTTGGTGAGGTGGGGTTGTCTGGC
GAGATTAGGCCTGTGCCGAATGGGCAGGAGCGTTTGATTGAGGCGGCTAAGCATGGCTTTAAACGTGCGATTGTCCCTAA
AGCGAATATGCCAAAAAAAGCGCCAGAGGGCATGGAAGTGATAGGTGTGACTAAATTAGCTCAAGCATTAGAAGCGTTAT
AA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
48.124 |
100 |
0.481 |
| radA | Streptococcus mitis NCTC 12261 |
40.44 |
100 |
0.406 |
| radA | Streptococcus pneumoniae Rx1 |
40.44 |
100 |
0.406 |
| radA | Streptococcus pneumoniae D39 |
40.44 |
100 |
0.406 |
| radA | Streptococcus pneumoniae R6 |
40.44 |
100 |
0.406 |
| radA | Streptococcus pneumoniae TIGR4 |
40.44 |
100 |
0.406 |
| radA | Streptococcus mitis SK321 |
40.44 |
100 |
0.406 |