Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   KAN02_RS17070 Genome accession   NZ_CP036171
Coordinates   3549620..3551848 (+) Length   742 a.a.
NCBI ID   WP_087605792.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3544620..3556848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS17040 (KAN02_17040) lnt 3544656..3546215 (+) 1560 WP_087605791.1 apolipoprotein N-acyltransferase -
  KAN02_RS17045 (KAN02_17045) - 3546217..3546555 (-) 339 WP_000434938.1 tRNA-binding protein -
  KAN02_RS17050 (KAN02_17050) - 3546796..3547056 (+) 261 WP_004710772.1 DUF2798 domain-containing protein -
  KAN02_RS17055 (KAN02_17055) - 3547117..3547461 (-) 345 WP_004698999.1 hypothetical protein -
  KAN02_RS17060 (KAN02_17060) gspG 3547727..3548242 (-) 516 WP_017398156.1 type II secretion system major pseudopilin GspG -
  KAN02_RS17065 (KAN02_17065) gspF 3548266..3549471 (-) 1206 WP_006582259.1 type II secretion system inner membrane protein GspF -
  KAN02_RS17070 (KAN02_17070) priA 3549620..3551848 (+) 2229 WP_087605792.1 primosomal protein N' Machinery gene
  KAN02_RS17075 (KAN02_17075) - 3551924..3553765 (+) 1842 WP_087605793.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KAN02_RS17080 (KAN02_17080) - 3553931..3554806 (+) 876 WP_004710781.1 Hsp33 family molecular chaperone HslO -
  KAN02_RS17085 (KAN02_17085) - 3554943..3555554 (+) 612 WP_087605794.1 LysE family translocator -
  KAN02_RS17090 (KAN02_17090) - 3555704..3556663 (+) 960 WP_087605795.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83901.75 Da        Isoelectric Point: 8.6657

>NTDB_id=347305 KAN02_RS17070 WP_087605792.1 3549620..3551848(+) (priA) [Acinetobacter nosocomialis strain KAN02]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DNEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=347305 KAN02_RS17070 WP_087605792.1 3549620..3551848(+) (priA) [Acinetobacter nosocomialis strain KAN02]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATAATGAACCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTCATGCAAACTGCTTTACCTGCGTTATTACGTCAGGGTAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACTACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTTCAAAAGAAAGGACTGGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGCCCAGCACCCGTACAATTGGCGCAAATGCCACTCACGCTAAATGATGACCAAA
AGAAAGCCACTCAGCACGTCATTAATGCACAGCATCAATATCAAGCGTTTTTATTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTATTGGTGTTAGTTCCTGAAATTGGTTT
GACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTACTGCATTCGGGCTTAAATGACTCTA
AACGCTTACAAGCATGGCAACAGGCACAGACTGGAAAGGCCTCTATTATTTTAGGGACGCGTTCAGCCATTTATACACCA
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAGCAAGAAGGCTTCCGTTACCATGC
CCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCACTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAACATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCTTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTCGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCACATTGTGATGCGCATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGCCACCACTGCGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAGAGTCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTACTGAGTGTCGATATCCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTGACCACGCTTATTGAAAAAGATTATCGGGCAGTCGCAAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCAGTTTTAATTCGTGCTGAATCGAAAGATCGCGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGATATTGTTGATATCTGGGGACCAATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTATTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCCGACTTTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.113

100

0.981

Multiple sequence alignment