Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   KAN02_RS02530 Genome accession   NZ_CP036171
Coordinates   520958..521842 (+) Length   294 a.a.
NCBI ID   WP_039246295.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515958..526842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS02505 (KAN02_02505) - 516350..517597 (-) 1248 WP_002050751.1 YihY family inner membrane protein -
  KAN02_RS02510 (KAN02_02510) wrbA 517878..518480 (+) 603 WP_188198231.1 NAD(P)H:quinone oxidoreductase -
  KAN02_RS02515 (KAN02_02515) - 518535..519110 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  KAN02_RS02520 (KAN02_02520) - 519182..519895 (-) 714 WP_002050776.1 DUF3108 domain-containing protein -
  KAN02_RS02525 (KAN02_02525) - 520053..520724 (-) 672 WP_002050771.1 hypothetical protein -
  KAN02_RS02530 (KAN02_02530) tonB2 520958..521842 (+) 885 WP_039246295.1 energy transducer TonB Machinery gene
  KAN02_RS02535 (KAN02_02535) ybeY 521932..522408 (-) 477 WP_004711856.1 rRNA maturation RNase YbeY -
  KAN02_RS02540 (KAN02_02540) - 522418..523506 (-) 1089 WP_002050786.1 PhoH family protein -
  KAN02_RS02545 (KAN02_02545) miaB 523544..524995 (-) 1452 WP_087607038.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33614.47 Da        Isoelectric Point: 9.4514

>NTDB_id=347286 KAN02_RS02530 WP_039246295.1 520958..521842(+) (tonB2) [Acinetobacter nosocomialis strain KAN02]
MLKKRSLSIEPFHYWWQDRVFIVAIILAILLHTFILLIHFAMPAPSEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRAAHRMSSNSPTPMPTDASTGEAQLDTLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=347286 KAN02_RS02530 WP_039246295.1 520958..521842(+) (tonB2) [Acinetobacter nosocomialis strain KAN02]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTTTTTATTGTCGCGATAATACT
CGCAATCTTATTGCATACTTTTATACTGCTCATCCATTTTGCGATGCCTGCACCATCAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAGCGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATGCTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAAGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGTGAAGTCCGCCTTATGGTGATTTTAAATGCTCAAGGGGGAATTCGTGCAATCCGTTTA
CTTGAAAGTTCAGGACATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGTCGTGGAGCACCATTTGGTCGTTTTGA
TGCAAATATGAAGGATATTTCCGAGCTACGTATTGTGCGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

95.238

100

0.952

Multiple sequence alignment