Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GII81_RS08015 Genome accession   NZ_CP045820
Coordinates   1536045..1536494 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain MB9_B1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531045..1541494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII81_RS07975 (GII81_07975) ctaE 1531061..1531684 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  GII81_RS07980 (GII81_07980) ctaF 1531687..1532019 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  GII81_RS07985 (GII81_07985) ctaG 1532047..1532940 (+) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  GII81_RS07990 (GII81_07990) ylbA 1532972..1533334 (-) 363 WP_003232238.1 YugN family protein -
  GII81_RS07995 (GII81_07995) ylbB 1533474..1533920 (+) 447 WP_003221362.1 CBS domain-containing protein -
  GII81_RS08000 (GII81_08000) ylbC 1534004..1535044 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  GII81_RS08005 (GII81_08005) ylbD 1535276..1535674 (+) 399 WP_003232233.1 YlbD family protein -
  GII81_RS08010 (GII81_08010) ylbE 1535690..1535929 (+) 240 WP_003232231.1 YlbE-like family protein -
  GII81_RS08015 (GII81_08015) ylbF 1536045..1536494 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GII81_RS08020 (GII81_08020) ylbG 1536549..1536821 (+) 273 WP_015715839.1 YlbG family protein -
  GII81_RS08025 (GII81_08025) rsmD 1537144..1537698 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GII81_RS08030 (GII81_08030) coaD 1537703..1538188 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GII81_RS08035 (GII81_08035) spoVV 1538199..1539425 (-) 1227 WP_046664166.1 dipicolinic acid transporter SpoVV -
  GII81_RS08040 (GII81_08040) ylbK 1539606..1540388 (+) 783 WP_021479345.1 patatin family protein -
  GII81_RS08045 (GII81_08045) sepM 1540390..1541415 (+) 1026 WP_046664167.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=347245 GII81_RS08015 WP_003221370.1 1536045..1536494(+) (ylbF) [Bacillus subtilis strain MB9_B1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=347245 GII81_RS08015 WP_003221370.1 1536045..1536494(+) (ylbF) [Bacillus subtilis strain MB9_B1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1