Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GII81_RS08045 Genome accession   NZ_CP045820
Coordinates   1540390..1541415 (+) Length   341 a.a.
NCBI ID   WP_046664167.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535390..1546415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII81_RS08010 (GII81_08010) ylbE 1535690..1535929 (+) 240 WP_003232231.1 YlbE-like family protein -
  GII81_RS08015 (GII81_08015) ylbF 1536045..1536494 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GII81_RS08020 (GII81_08020) ylbG 1536549..1536821 (+) 273 WP_015715839.1 YlbG family protein -
  GII81_RS08025 (GII81_08025) rsmD 1537144..1537698 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GII81_RS08030 (GII81_08030) coaD 1537703..1538188 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GII81_RS08035 (GII81_08035) spoVV 1538199..1539425 (-) 1227 WP_046664166.1 dipicolinic acid transporter SpoVV -
  GII81_RS08040 (GII81_08040) ylbK 1539606..1540388 (+) 783 WP_021479345.1 patatin family protein -
  GII81_RS08045 (GII81_08045) sepM 1540390..1541415 (+) 1026 WP_046664167.1 protease DdcP Regulator
  GII81_RS08050 (GII81_08050) tmcAL 1541432..1542679 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  GII81_RS08055 (GII81_08055) - 1542676..1542861 (-) 186 WP_003232215.1 hypothetical protein -
  GII81_RS08060 (GII81_08060) ylbN 1542889..1543407 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  GII81_RS08065 (GII81_08065) rpmF 1543429..1543608 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  GII81_RS08070 (GII81_08070) gerR 1543754..1544335 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  GII81_RS08075 (GII81_08075) ylbP 1544392..1544874 (-) 483 WP_014476736.1 N-acetyltransferase -
  GII81_RS08080 (GII81_08080) panEA 1545034..1545930 (+) 897 WP_046664171.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37635.23 Da        Isoelectric Point: 6.5349

>NTDB_id=347246 GII81_RS08045 WP_046664167.1 1540390..1541415(+) (sepM) [Bacillus subtilis strain MB9_B1]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDFISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=347246 GII81_RS08045 WP_046664167.1 1540390..1541415(+) (sepM) [Bacillus subtilis strain MB9_B1]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTTTATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCATCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.857

100

0.399