Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DBZ52_RS16095 Genome accession   NZ_CP036167
Coordinates   3145953..3146558 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Stanley strain sg_wt8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3140953..3151558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBZ52_RS16080 (DBZ52_016080) helD 3141170..3143224 (-) 2055 WP_001748328.1 DNA helicase IV -
  DBZ52_RS16085 (DBZ52_016085) - 3143348..3143794 (+) 447 WP_001261222.1 YccF domain-containing protein -
  DBZ52_RS16090 (DBZ52_016090) yccS 3143813..3145966 (+) 2154 WP_000950876.1 YccS family putative transporter -
  DBZ52_RS16095 (DBZ52_016095) sxy/tfoX 3145953..3146558 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  DBZ52_RS16100 (DBZ52_016100) sulA 3146775..3147284 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  DBZ52_RS16105 (DBZ52_016105) ompA 3147641..3148693 (+) 1053 WP_001670727.1 porin OmpA -
  DBZ52_RS16110 (DBZ52_016110) matP 3148765..3149217 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  DBZ52_RS16115 (DBZ52_016115) - 3149403..3151163 (+) 1761 WP_023204727.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=347229 DBZ52_RS16095 WP_001202375.1 3145953..3146558(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Stanley strain sg_wt8]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=347229 DBZ52_RS16095 WP_001202375.1 3145953..3146558(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Stanley strain sg_wt8]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment