Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DBZ83_RS14870 Genome accession   NZ_CP036166
Coordinates   2954587..2955192 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww281     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2949587..2960192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBZ83_RS14855 (DBZ83_014900) helD 2949804..2951858 (-) 2055 WP_061424483.1 DNA helicase IV -
  DBZ83_RS14860 (DBZ83_014905) - 2951982..2952428 (+) 447 WP_001261222.1 YccF domain-containing protein -
  DBZ83_RS14865 (DBZ83_014910) yccS 2952447..2954600 (+) 2154 WP_061424484.1 YccS family putative transporter -
  DBZ83_RS14870 (DBZ83_014915) sxy/tfoX 2954587..2955192 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  DBZ83_RS14875 (DBZ83_014920) sulA 2955409..2955918 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  DBZ83_RS14880 (DBZ83_014925) ompA 2956275..2957333 (+) 1059 WP_001747676.1 porin OmpA -
  DBZ83_RS14885 (DBZ83_014930) matP 2957405..2957857 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  DBZ83_RS14890 (DBZ83_014935) - 2958043..2959803 (+) 1761 WP_061424485.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=347207 DBZ83_RS14870 WP_001202375.1 2954587..2955192(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww281]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=347207 DBZ83_RS14870 WP_001202375.1 2954587..2955192(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww281]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGTGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTACTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment