Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW57_RS25505 Genome accession   NZ_CP036145
Coordinates   4946177..4947526 (-) Length   449 a.a.
NCBI ID   WP_215566776.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS94/5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4941177..4952526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW57_RS25470 (EXW57_25990) - 4941298..4941993 (-) 696 WP_215566213.1 hypothetical protein -
  EXW57_RS25475 (EXW57_25995) - 4941980..4942768 (-) 789 WP_002129925.1 hypothetical protein -
  EXW57_RS25480 (EXW57_26000) - 4942800..4943384 (-) 585 WP_002068272.1 hypothetical protein -
  EXW57_RS25485 (EXW57_26005) - 4943503..4943997 (-) 495 WP_002184661.1 hypothetical protein -
  EXW57_RS25490 (EXW57_26010) raiA 4944286..4944828 (-) 543 WP_002089603.1 ribosome-associated translation inhibitor RaiA -
  EXW57_RS25495 (EXW57_26015) cspC 4945149..4945346 (-) 198 WP_001990088.1 cold shock protein CspC -
  EXW57_RS25500 (EXW57_26020) - 4945473..4946177 (-) 705 WP_033731070.1 ComF family protein -
  EXW57_RS25505 (EXW57_26025) comFA 4946177..4947526 (-) 1350 WP_215566776.1 ATP-dependent helicase ComFA Machinery gene
  EXW57_RS25510 (EXW57_26035) - 4948944..4950428 (-) 1485 WP_215566214.1 O-antigen polysaccharide polymerase Wzy family protein -
  EXW57_RS29140 - 4951512..4951673 (+) 162 WP_350464072.1 recombinase zinc beta ribbon domain-containing protein -
  EXW57_RS25515 (EXW57_26050) - 4951862..4952263 (-) 402 Protein_5005 DNA/RNA helicase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50969.37 Da        Isoelectric Point: 9.4469

>NTDB_id=347147 EXW57_RS25505 WP_215566776.1 4946177..4947526(-) (comFA) [Bacillus mycoides strain JAS94/5]
MLAGRQLLLEELSSDLQDKLDHLKKHREVVCMQGVIKKFSKYTCQRCGNIEQRLFASLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGVLSDGQELAAQSVVDAVRQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=347147 EXW57_RS25505 WP_215566776.1 4946177..4947526(-) (comFA) [Bacillus mycoides strain JAS94/5]
ATGTTAGCTGGTAGACAGTTATTGTTAGAAGAACTCTCTTCAGATTTGCAGGATAAATTGGATCATTTGAAAAAGCACCG
AGAAGTCGTTTGTATGCAAGGTGTAATTAAGAAGTTTTCAAAATATACGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAGGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGTCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AGCGAGGAGTAACTGTTAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.452

98.441

0.497
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365

Multiple sequence alignment