Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECBD_RS13745 Genome accession   NC_012947
Coordinates   2755529..2756158 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli 'BL21-Gold(DE3)pLysS AG'     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2750529..2761158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECBD_RS13730 (ECBD_2632) helD 2750771..2752825 (-) 2055 WP_001295354.1 DNA helicase IV -
  ECBD_RS13735 (ECBD_2633) yccF 2752948..2753394 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ECBD_RS13740 (ECBD_2634) yccS 2753404..2755566 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ECBD_RS13745 (ECBD_2635) sxy/tfoX 2755529..2756158 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECBD_RS13750 (ECBD_2636) sulA 2756377..2756886 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECBD_RS13760 (ECBD_2638) ompA 2757243..2758283 (+) 1041 WP_000750416.1 porin OmpA -
  ECBD_RS13765 (ECBD_2639) matP 2758359..2758811 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECBD_RS13770 (ECBD_2640) ycbZ 2758997..2760757 (+) 1761 WP_000156531.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=34709 ECBD_RS13745 WP_000839153.1 2755529..2756158(-) (sxy/tfoX) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=34709 ECBD_RS13745 WP_000839153.1 2755529..2756158(-) (sxy/tfoX) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment