Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW42_RS13365 Genome accession   NZ_CP036137
Coordinates   2600117..2600404 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain JAS85/1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2595117..2605404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW42_RS13345 (EXW42_13625) - 2596307..2596494 (+) 188 Protein_2555 DUF4083 domain-containing protein -
  EXW42_RS13350 (EXW42_13630) - 2596522..2596983 (+) 462 WP_002130989.1 NUDIX hydrolase -
  EXW42_RS13355 (EXW42_13635) nadE 2597028..2597846 (-) 819 WP_002012398.1 ammonia-dependent NAD(+) synthetase -
  EXW42_RS13360 (EXW42_13640) - 2598117..2599997 (+) 1881 WP_002012400.1 FtsX-like permease family protein -
  EXW42_RS13365 (EXW42_13645) abrB 2600117..2600404 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW42_RS13370 (EXW42_13650) - 2600739..2601689 (+) 951 WP_002012402.1 serine protease -
  EXW42_RS13375 (EXW42_13655) - 2601730..2602038 (-) 309 WP_002012403.1 helix-turn-helix transcriptional regulator -
  EXW42_RS13380 (EXW42_13660) - 2602146..2603081 (+) 936 WP_063226473.1 aldo/keto reductase -
  EXW42_RS13385 (EXW42_13665) - 2603131..2604306 (+) 1176 WP_215561066.1 MFS transporter -
  EXW42_RS13390 (EXW42_13675) - 2604491..2604715 (-) 225 WP_002012407.1 hypothetical protein -
  EXW42_RS13395 (EXW42_13680) - 2604800..2605147 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=347084 EXW42_RS13365 WP_002012401.1 2600117..2600404(+) (abrB) [Bacillus mycoides strain JAS85/1]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=347084 EXW42_RS13365 WP_002012401.1 2600117..2600404(+) (abrB) [Bacillus mycoides strain JAS85/1]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGTATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558

Multiple sequence alignment