Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW42_RS09995 Genome accession   NZ_CP036137
Coordinates   1947392..1947715 (-) Length   107 a.a.
NCBI ID   WP_002030429.1    Uniprot ID   A0A084J505
Organism   Bacillus mycoides strain JAS85/1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942392..1952715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW42_RS09970 (EXW42_10185) - 1942571..1943857 (+) 1287 WP_002126097.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW42_RS09975 (EXW42_10190) sipW 1944054..1944623 (+) 570 WP_002064334.1 signal peptidase I SipW -
  EXW42_RS09980 (EXW42_10195) - 1944690..1945277 (+) 588 WP_000172837.1 CalY family protein -
  EXW42_RS09985 (EXW42_10200) - 1945439..1946272 (+) 834 WP_002168858.1 DUF4047 domain-containing protein -
  EXW42_RS09990 (EXW42_10205) calY 1946716..1947309 (+) 594 WP_002126106.1 biofilm matrix protein CalY -
  EXW42_RS09995 (EXW42_10210) sinR 1947392..1947715 (-) 324 WP_002030429.1 helix-turn-helix domain-containing protein Regulator
  EXW42_RS10000 (EXW42_10215) - 1947795..1947929 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW42_RS10005 (EXW42_10220) inhA1 1948272..1950659 (+) 2388 WP_215560991.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW42_RS10010 (EXW42_10225) - 1950830..1952197 (+) 1368 WP_002126112.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=347081 EXW42_RS09995 WP_002030429.1 1947392..1947715(-) (sinR) [Bacillus mycoides strain JAS85/1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=347081 EXW42_RS09995 WP_002030429.1 1947392..1947715(-) (sinR) [Bacillus mycoides strain JAS85/1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084J505

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment