Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SAVC_RS09025 Genome accession   NC_016912
Coordinates   1829581..1830321 (-) Length   246 a.a.
NCBI ID   WP_000216878.1    Uniprot ID   A0A0H2XJD3
Organism   Staphylococcus aureus subsp. aureus VC40     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824581..1835321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAVC_RS09000 (SAVC_08395) hemH 1825457..1826380 (-) 924 WP_000162880.1 ferrochelatase -
  SAVC_RS09005 (SAVC_08400) hemE 1826438..1827475 (-) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  SAVC_RS09010 - 1827465..1827575 (-) 111 WP_001790154.1 hypothetical protein -
  SAVC_RS09015 (SAVC_08405) traP 1827738..1828241 (+) 504 WP_000737976.1 signal transduction protein TRAP -
  SAVC_RS09020 (SAVC_08410) - 1828365..1829588 (-) 1224 WP_001245769.1 ABC transporter permease -
  SAVC_RS09025 (SAVC_08415) pptA 1829581..1830321 (-) 741 WP_000216878.1 ABC transporter ATP-binding protein Regulator
  SAVC_RS09030 (SAVC_08420) - 1830455..1830877 (+) 423 WP_000004981.1 HIT family protein -
  SAVC_RS09035 (SAVC_08425) - 1831019..1831384 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  SAVC_RS09040 (SAVC_08430) - 1832117..1832674 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  SAVC_RS09045 - 1832879..1833841 (+) 963 Protein_1730 peptidylprolyl isomerase -
  SAVC_RS09050 (SAVC_08450) yhaM 1833962..1834903 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27717.04 Da        Isoelectric Point: 4.6672

>NTDB_id=34706 SAVC_RS09025 WP_000216878.1 1829581..1830321(-) (pptA) [Staphylococcus aureus subsp. aureus VC40]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDETMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=34706 SAVC_RS09025 WP_000216878.1 1829581..1830321(-) (pptA) [Staphylococcus aureus subsp. aureus VC40]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAACGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAGTTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTACTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XJD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545

Multiple sequence alignment