Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW56_RS24745 Genome accession   NZ_CP036132
Coordinates   4788725..4790074 (-) Length   449 a.a.
NCBI ID   WP_215597044.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS823     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4783725..4795074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS24720 (EXW56_25230) - 4785110..4786048 (-) 939 WP_002112865.1 YafY family protein -
  EXW56_RS24725 (EXW56_25235) - 4786131..4786574 (+) 444 WP_002198855.1 VOC family protein -
  EXW56_RS24730 (EXW56_25240) raiA 4786833..4787375 (-) 543 WP_002159874.1 ribosome-associated translation inhibitor RaiA -
  EXW56_RS24735 (EXW56_25245) cspC 4787697..4787894 (-) 198 WP_033710669.1 cold shock protein CspC -
  EXW56_RS24740 (EXW56_25250) - 4788021..4788725 (-) 705 WP_002198854.1 ComF family protein -
  EXW56_RS24745 (EXW56_25255) comFA 4788725..4790074 (-) 1350 WP_215597044.1 ATP-dependent helicase ComFA Machinery gene
  EXW56_RS24750 (EXW56_25260) - 4790205..4791545 (-) 1341 WP_215597045.1 C40 family peptidase -
  EXW56_RS24755 (EXW56_25265) - 4791778..4792092 (-) 315 WP_002112882.1 helix-turn-helix domain-containing protein -
  EXW56_RS24760 (EXW56_25270) - 4792266..4793108 (-) 843 WP_002112883.1 DegV family protein -
  EXW56_RS24765 (EXW56_25275) - 4793347..4793982 (+) 636 WP_002198851.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50938.40 Da        Isoelectric Point: 9.5297

>NTDB_id=347048 EXW56_RS24745 WP_215597044.1 4788725..4790074(-) (comFA) [Bacillus mycoides strain JAS823]
MLAGRQLLLEELSSDLQDKLEHLKKNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFASFLCKRCNKVCTYCRKCITMGRVS
ECAVLVRGIAEISGENYLNPLQWEGVLSAGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLHYAVHEAM
KEEAARIYLTATPDEKWKRKLRNGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLMRKKIPRALLQWLNMYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=347048 EXW56_RS24745 WP_215597044.1 4788725..4790074(-) (comFA) [Bacillus mycoides strain JAS823]
ATGTTAGCTGGTAGACAGTTATTGTTAGAAGAACTGTCTTCAGATTTGCAGGATAAATTGGAGCATTTGAAAAAGAATCG
AGACGTCGTTTGTGTACAAGGGGTAATTAAGAAATCTTCAAAATATATGTGCCAACGCTGCGGAAATATAGAACAGCGAC
TATTTGCATCATTTCTATGTAAAAGGTGCAATAAAGTATGTACGTATTGCCGGAAGTGCATAACGATGGGCAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAATTATTTGAATCCGTTACAGTGGGAAGGTGTTTT
GTCTGCTGGCCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAAGCACTACAAAAGGGAGAGAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGGTTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCATTATGCAGTACACGAAGCGATG
AAAGAGGAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAATTGCGGAATGGTAAGCAAAA
AGGGGTTATTATTTCAGGACGTTATCATCGTCATCCATTGCCAGTCCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATGCGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATATGTACTTATCTAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGTCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAGGGAGAAATCCCTTTATTAGTTACAACGACAATTTTGG
AACGAGGAGTAACTGTGAAAAATTTACAAGTGGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTCATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.131

98.441

0.503
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365

Multiple sequence alignment