Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EXW56_RS20570 Genome accession   NZ_CP036132
Coordinates   4014187..4014933 (-) Length   248 a.a.
NCBI ID   WP_002199331.1    Uniprot ID   J7XT79
Organism   Bacillus mycoides strain JAS823     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4009187..4019933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS20550 (EXW56_20965) dnaG 4009917..4011719 (-) 1803 WP_002067179.1 DNA primase -
  EXW56_RS27750 - 4011920..4012213 (-) 294 WP_002111881.1 DUF188 domain-containing protein -
  EXW56_RS20560 (EXW56_20975) - 4012606..4013418 (-) 813 WP_002111882.1 pyruvate, water dikinase regulatory protein -
  EXW56_RS20565 (EXW56_20980) - 4013448..4014080 (-) 633 WP_087945800.1 helix-turn-helix transcriptional regulator -
  EXW56_RS20570 (EXW56_20985) recO 4014187..4014933 (-) 747 WP_002199331.1 DNA repair protein RecO Machinery gene
  EXW56_RS20575 (EXW56_20990) - 4014967..4015110 (-) 144 WP_000883924.1 YqzL family protein -
  EXW56_RS20580 (EXW56_20995) era 4015287..4016192 (-) 906 WP_215596899.1 GTPase Era -
  EXW56_RS20585 (EXW56_21000) - 4016185..4016583 (-) 399 WP_215557477.1 cytidine deaminase -
  EXW56_RS20590 (EXW56_21005) - 4016683..4017036 (-) 354 WP_002199329.1 diacylglycerol kinase family protein -
  EXW56_RS20595 (EXW56_21010) ybeY 4017033..4017503 (-) 471 WP_215557479.1 rRNA maturation RNase YbeY -
  EXW56_RS20600 (EXW56_21015) - 4017500..4019644 (-) 2145 WP_002199327.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28616.18 Da        Isoelectric Point: 8.3250

>NTDB_id=347038 EXW56_RS20570 WP_002199331.1 4014187..4014933(-) (recO) [Bacillus mycoides strain JAS823]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQIGSGLGTLQQGEIISSMKE
IRKDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=347038 EXW56_RS20570 WP_002199331.1 4014187..4014933(-) (recO) [Bacillus mycoides strain JAS823]
ATGTTTCAAAAAGTTGAGGGCATTGTCATCCGTACAACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAACCGAAGAGTCGGTTAGCGGCTATTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATTGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCAAGGATATATTTTTAACTGCTTATGCATCATTTATTATCGAATTAACTGATAAAGCAACAGAAGATAAGAAGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCACCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAGCAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTCGATCTACACCGGCTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGATGAATATTGTGGGATTTATTTGAAATCAAGGCGTTTCCTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7XT79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment