Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EXW56_RS19950 Genome accession   NZ_CP036132
Coordinates   3909978..3911717 (-) Length   579 a.a.
NCBI ID   WP_002145805.1    Uniprot ID   J8AQ72
Organism   Bacillus mycoides strain JAS823     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3904978..3916717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS19920 (EXW56_20330) - 3905308..3905541 (+) 234 WP_002111735.1 DUF2627 domain-containing protein -
  EXW56_RS19925 (EXW56_20335) - 3905584..3906318 (-) 735 WP_002111737.1 glycerophosphodiester phosphodiesterase -
  EXW56_RS19930 (EXW56_20340) - 3906369..3906515 (+) 147 WP_001247671.1 YycC family protein -
  EXW56_RS19935 (EXW56_20345) - 3906664..3907236 (-) 573 WP_016106126.1 PRK06770 family protein -
  EXW56_RS19940 (EXW56_20350) spo0A 3907486..3908280 (-) 795 WP_002111741.1 sporulation transcription factor Spo0A Regulator
  EXW56_RS19945 (EXW56_20360) spoIVB 3908567..3909859 (-) 1293 WP_033716821.1 SpoIVB peptidase -
  EXW56_RS19950 (EXW56_20365) recN 3909978..3911717 (-) 1740 WP_002145805.1 DNA repair protein RecN Machinery gene
  EXW56_RS19955 (EXW56_20370) argR 3911988..3912437 (-) 450 WP_002015076.1 arginine repressor ArgR -
  EXW56_RS19960 (EXW56_20375) - 3912580..3913419 (-) 840 WP_002067084.1 TlyA family RNA methyltransferase -
  EXW56_RS19965 (EXW56_20380) dxs 3913423..3915315 (-) 1893 WP_002111749.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EXW56_RS19970 (EXW56_20385) ispA 3915624..3916517 (-) 894 WP_002111751.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65711.89 Da        Isoelectric Point: 5.0507

>NTDB_id=347036 EXW56_RS19950 WP_002145805.1 3909978..3911717(-) (recN) [Bacillus mycoides strain JAS823]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
DIYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRNADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=347036 EXW56_RS19950 WP_002145805.1 3909978..3911717(-) (recN) [Bacillus mycoides strain JAS823]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGATTATTCTATGTAGAAGATGACAAGCATCCATGTATCGCAAAA
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GACATATATCAAAATGTATATACAGACTATGAGAAGTTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGCAATGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCATATCGTTCGTTAAGTGGA
GACGGACAGGGATTAGATCATGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCCATTGCAAATAGTTATTACTTATTAGAAGAAGTTGCATATCAGCTTAGAGAAAAGTTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGCGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CAGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTAAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCCGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCGCAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCGCATTTATTTATTAGAAAACAAGTGGCGAATGATCGGACGATTACATCGGTTACTG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment