Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW56_RS06415 Genome accession   NZ_CP036132
Coordinates   1267789..1268112 (-) Length   107 a.a.
NCBI ID   WP_002064339.1    Uniprot ID   J8AHG1
Organism   Bacillus mycoides strain JAS823     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262789..1273112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS06390 (EXW56_06550) - 1263053..1264339 (+) 1287 WP_002201288.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW56_RS06395 (EXW56_06555) sipW 1264540..1265109 (+) 570 WP_002201287.1 signal peptidase I SipW -
  EXW56_RS06400 (EXW56_06560) - 1265171..1265758 (+) 588 WP_215597321.1 CalY family protein -
  EXW56_RS06405 (EXW56_06565) - 1265879..1266727 (+) 849 WP_215597322.1 DUF4047 domain-containing protein -
  EXW56_RS06410 (EXW56_06570) calY 1267114..1267707 (+) 594 WP_002201283.1 biofilm matrix protein CalY -
  EXW56_RS06415 (EXW56_06575) sinR 1267789..1268112 (-) 324 WP_002064339.1 helix-turn-helix domain-containing protein Regulator
  EXW56_RS06420 (EXW56_06580) - 1268192..1268326 (-) 135 WP_002201282.1 anti-repressor SinI family protein -
  EXW56_RS06425 (EXW56_06585) inhA1 1268668..1271055 (+) 2388 WP_002201281.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW56_RS06430 (EXW56_06590) - 1271209..1272594 (+) 1386 WP_286119274.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.06 Da        Isoelectric Point: 7.2050

>NTDB_id=347023 EXW56_RS06415 WP_002064339.1 1267789..1268112(-) (sinR) [Bacillus mycoides strain JAS823]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=347023 EXW56_RS06415 WP_002064339.1 1267789..1268112(-) (sinR) [Bacillus mycoides strain JAS823]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTCGAAAAAATTTCAGCTGTTC
TACAAATTCCAGTTGATACGTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AHG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment