Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GII83_RS18780 Genome accession   NZ_CP045818
Coordinates   3648781..3649914 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain MB9_B6     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3643781..3654914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS18740 (GII83_18740) ywnA 3643950..3644351 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  GII83_RS18745 (GII83_18745) ureC 3644486..3646195 (-) 1710 WP_029726053.1 urease subunit alpha -
  GII83_RS18750 (GII83_18750) ureB 3646192..3646566 (-) 375 WP_029726054.1 urease subunit beta -
  GII83_RS18755 (GII83_18755) ureA 3646563..3646880 (-) 318 WP_003227724.1 urease subunit gamma -
  GII83_RS18760 (GII83_18760) - 3647071..3647231 (-) 161 Protein_3661 hypothetical protein -
  GII83_RS21425 - 3647503..3647671 (-) 169 Protein_3662 urea ABC transporter substrate-binding protein -
  GII83_RS18770 (GII83_18770) csbD 3647885..3648073 (-) 189 WP_003227718.1 stress response protein CsbD -
  GII83_RS18775 (GII83_18775) - 3648146..3648625 (-) 480 WP_003244390.1 hypothetical protein -
  GII83_RS18780 (GII83_18780) rapC 3648781..3649914 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  GII83_RS18785 (GII83_18785) moaA 3650106..3651131 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  GII83_RS18790 (GII83_18790) fdhD 3651147..3651935 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  GII83_RS18795 (GII83_18795) - 3652182..3652343 (-) 162 WP_003227706.1 hypothetical protein -
  GII83_RS18800 (GII83_18800) ywmD 3652438..3653112 (-) 675 WP_029726055.1 VWA domain-containing protein -
  GII83_RS18805 (GII83_18805) - 3653165..3653305 (-) 141 WP_003227702.1 hypothetical protein -
  GII83_RS18810 (GII83_18810) ywmC 3653436..3654119 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=347017 GII83_RS18780 WP_003227715.1 3648781..3649914(-) (rapC) [Bacillus subtilis strain MB9_B6]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=347017 GII83_RS18780 WP_003227715.1 3648781..3649914(-) (rapC) [Bacillus subtilis strain MB9_B6]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment