Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW55_RS08415 Genome accession   NZ_CP036121
Coordinates   1654209..1654496 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain JAS635     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1649209..1659496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW55_RS08395 (EXW55_08490) - 1650393..1650635 (+) 243 WP_133116641.1 DUF4083 domain-containing protein -
  EXW55_RS08400 (EXW55_08495) - 1650620..1651081 (+) 462 WP_002141378.1 NUDIX hydrolase -
  EXW55_RS08405 (EXW55_08500) nadE 1651126..1651944 (-) 819 WP_002031433.1 ammonia-dependent NAD(+) synthetase -
  EXW55_RS08410 (EXW55_08505) - 1652209..1654089 (+) 1881 WP_016102182.1 ABC transporter permease -
  EXW55_RS08415 (EXW55_08510) abrB 1654209..1654496 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW55_RS08420 (EXW55_08515) - 1654831..1655781 (+) 951 WP_016102180.1 serine protease -
  EXW55_RS08425 (EXW55_08520) - 1655822..1656130 (-) 309 WP_016102179.1 helix-turn-helix transcriptional regulator -
  EXW55_RS08430 (EXW55_08525) - 1656238..1657173 (+) 936 WP_098635371.1 aldo/keto reductase -
  EXW55_RS32355 (EXW55_08530) - 1657223..1657427 (+) 205 Protein_1652 hypothetical protein -
  EXW55_RS08440 (EXW55_08535) - 1657458..1657682 (-) 225 WP_098635370.1 hypothetical protein -
  EXW55_RS08445 (EXW55_08540) - 1657767..1658114 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -
  EXW55_RS08450 (EXW55_08545) - 1658311..1658838 (+) 528 WP_098635369.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=346967 EXW55_RS08415 WP_002012401.1 1654209..1654496(+) (abrB) [Bacillus mycoides strain JAS635]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=346967 EXW55_RS08415 WP_002012401.1 1654209..1654496(+) (abrB) [Bacillus mycoides strain JAS635]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558

Multiple sequence alignment