Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW55_RS05065 Genome accession   NZ_CP036121
Coordinates   1000464..1000787 (-) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain JAS635     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 995464..1005787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW55_RS05040 (EXW55_05130) - 995645..996931 (+) 1287 WP_098635425.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW55_RS05045 (EXW55_05135) sipW 997128..997697 (+) 570 WP_002064334.1 signal peptidase I SipW -
  EXW55_RS05050 (EXW55_05140) - 997764..998351 (+) 588 WP_002030432.1 CalY family protein -
  EXW55_RS05055 (EXW55_05145) - 998513..999346 (+) 834 WP_002168858.1 DUF4047 domain-containing protein -
  EXW55_RS05060 (EXW55_05150) calY 999788..1000381 (+) 594 WP_098635424.1 biofilm matrix protein CalY -
  EXW55_RS05065 (EXW55_05155) sinR 1000464..1000787 (-) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  EXW55_RS05070 (EXW55_05160) - 1000867..1001001 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW55_RS05075 (EXW55_05165) inhA1 1001344..1003731 (+) 2388 WP_088292732.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW55_RS05080 (EXW55_05170) - 1003902..1005269 (+) 1368 WP_098635423.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=346964 EXW55_RS05065 WP_002011473.1 1000464..1000787(-) (sinR) [Bacillus mycoides strain JAS635]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=346964 EXW55_RS05065 WP_002011473.1 1000464..1000787(-) (sinR) [Bacillus mycoides strain JAS635]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment