Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GII83_RS10400 Genome accession   NZ_CP045818
Coordinates   2081945..2083720 (-) Length   591 a.a.
NCBI ID   WP_029726826.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2076945..2088720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS10380 (GII83_10380) desE 2077329..2078387 (+) 1059 WP_029726828.1 fatty acid desaturase DesE -
  GII83_RS10385 (GII83_10385) desK 2078507..2079619 (+) 1113 WP_015251908.1 two-component sensor histidine kinase DesK -
  GII83_RS10390 (GII83_10390) desR 2079638..2080237 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  GII83_RS10395 (GII83_10395) walN 2080834..2081697 (-) 864 WP_003231267.1 3D domain-containing protein -
  GII83_RS10400 (GII83_10400) recQ 2081945..2083720 (-) 1776 WP_029726826.1 DNA helicase RecQ Machinery gene
  GII83_RS10410 (GII83_10410) azoJ 2084284..2084910 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  GII83_RS10415 (GII83_10415) stpP 2085061..2085552 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  GII83_RS10420 (GII83_10420) - 2085627..2085959 (-) 333 WP_003231257.1 hypothetical protein -
  GII83_RS10425 (GII83_10425) - 2086037..2086264 (+) 228 WP_015383862.1 hypothetical protein -
  GII83_RS10430 (GII83_10430) yocM 2086251..2086727 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  GII83_RS10435 (GII83_10435) - 2086794..2087057 (+) 264 WP_004399338.1 hypothetical protein -
  GII83_RS10440 (GII83_10440) - 2087062..2087295 (+) 234 WP_029726825.1 hypothetical protein -
  GII83_RS10445 (GII83_10445) yozO 2087382..2087726 (-) 345 WP_003220141.1 PH domain-containing protein -
  GII83_RS10450 (GII83_10450) yozC 2088080..2088283 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67326.79 Da        Isoelectric Point: 6.2902

>NTDB_id=346958 GII83_RS10400 WP_029726826.1 2081945..2083720(-) (recQ) [Bacillus subtilis strain MB9_B6]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSVCYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=346958 GII83_RS10400 WP_029726826.1 2081945..2083720(-) (recQ) [Bacillus subtilis strain MB9_B6]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGGTTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
AGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGGATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACCGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGTCGGTATCACGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCACAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RQC domain (RQC)

(403-507)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.662

100

0.997

Multiple sequence alignment