Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   GII83_RS09035 Genome accession   NZ_CP045818
Coordinates   1742341..1742772 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain MB9_B6     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737341..1747772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS09015 (GII83_09015) spoVS 1737902..1738162 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  GII83_RS09020 (GII83_09020) tdh 1738428..1739471 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  GII83_RS09025 (GII83_09025) kbl 1739484..1740662 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  GII83_RS09030 (GII83_09030) miaB 1740810..1742339 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GII83_RS09035 (GII83_09035) ymcA 1742341..1742772 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  GII83_RS09040 (GII83_09040) cotE 1743034..1743579 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  GII83_RS09045 (GII83_09045) hexA 1743712..1746288 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=346952 GII83_RS09035 WP_003231834.1 1742341..1742772(+) (ymcA) [Bacillus subtilis strain MB9_B6]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=346952 GII83_RS09035 WP_003231834.1 1742341..1742772(+) (ymcA) [Bacillus subtilis strain MB9_B6]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment