Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW25_RS12385 Genome accession   NZ_CP036111
Coordinates   2445818..2446096 (+) Length   92 a.a.
NCBI ID   WP_000842219.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS411     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2440818..2451096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW25_RS12365 (EXW25_12570) - 2441582..2442184 (+) 603 WP_097954104.1 hypothetical protein -
  EXW25_RS12370 (EXW25_12575) - 2442693..2443874 (+) 1182 WP_142311450.1 agmatine deiminase family protein -
  EXW25_RS12375 (EXW25_12585) - 2444300..2444551 (-) 252 WP_000827556.1 helix-turn-helix transcriptional regulator -
  EXW25_RS12380 (EXW25_12590) - 2444799..2445677 (+) 879 WP_097954102.1 helix-turn-helix domain-containing protein -
  EXW25_RS12385 (EXW25_12595) abrB 2445818..2446096 (+) 279 WP_000842219.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW25_RS12390 (EXW25_12600) - 2446575..2447825 (+) 1251 WP_097954101.1 hypothetical protein -
  EXW25_RS12395 (EXW25_12605) - 2447893..2448651 (+) 759 WP_000347979.1 TSUP family transporter -
  EXW25_RS12400 (EXW25_12610) - 2448904..2449563 (+) 660 WP_000682551.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10296.07 Da        Isoelectric Point: 9.6266

>NTDB_id=346879 EXW25_RS12385 WP_000842219.1 2445818..2446096(+) (abrB) [Bacillus toyonensis strain JAS411]
MKSRGSTRKADSMGRIVIPMEIRRSLGIVEKDALEMFVEDDQIILRKYQSSQACAITGDISDKNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=346879 EXW25_RS12385 WP_000842219.1 2445818..2446096(+) (abrB) [Bacillus toyonensis strain JAS411]
ATGAAATCAAGAGGGAGTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATGCGCTAGAAATGTTTGTGGAAGATGATCAGATTATTTTGCGGAAATATCAATCTTCACAAGCTT
GTGCAATTACAGGTGATATTTCAGATAAGAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGAACAGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.333

97.826

0.522

Multiple sequence alignment