Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GII85_RS18575 Genome accession   NZ_CP045817
Coordinates   3634039..3635172 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain P5_B1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629039..3640172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS18535 (GII85_18535) ywnA 3629173..3629574 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  GII85_RS18540 (GII85_18540) ureC 3629709..3631418 (-) 1710 WP_015714862.1 urease subunit alpha -
  GII85_RS18545 (GII85_18545) ureB 3631415..3631789 (-) 375 WP_041850426.1 urease subunit beta -
  GII85_RS18550 (GII85_18550) ureA 3631786..3632103 (-) 318 WP_003227724.1 urease subunit gamma -
  GII85_RS18555 (GII85_18555) - 3632298..3632456 (-) 159 WP_120363539.1 hypothetical protein -
  GII85_RS18560 (GII85_18560) - 3632660..3632923 (-) 264 WP_231573524.1 ABC transporter -
  GII85_RS18565 (GII85_18565) csbD 3633144..3633332 (-) 189 WP_015251021.1 stress response protein CsbD -
  GII85_RS18570 (GII85_18570) - 3633405..3633884 (-) 480 WP_003244390.1 hypothetical protein -
  GII85_RS18575 (GII85_18575) rapC 3634039..3635172 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  GII85_RS18580 (GII85_18580) moaA 3635364..3636389 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  GII85_RS18585 (GII85_18585) fdhD 3636405..3637193 (-) 789 WP_032727044.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  GII85_RS18590 (GII85_18590) - 3637439..3637600 (-) 162 WP_021480806.1 hypothetical protein -
  GII85_RS18595 (GII85_18595) ywmD 3637695..3638369 (-) 675 WP_003243553.1 VWA domain-containing protein -
  GII85_RS18600 (GII85_18600) - 3638422..3638562 (-) 141 WP_014478246.1 hypothetical protein -
  GII85_RS18605 (GII85_18605) ywmC 3638693..3639376 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=346865 GII85_RS18575 WP_003227715.1 3634039..3635172(-) (rapC) [Bacillus subtilis strain P5_B1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=346865 GII85_RS18575 WP_003227715.1 3634039..3635172(-) (rapC) [Bacillus subtilis strain P5_B1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424