Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EXW34_RS20870 Genome accession   NZ_CP036102
Coordinates   4106348..4107094 (-) Length   248 a.a.
NCBI ID   WP_002190696.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS391     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4101348..4112094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW34_RS20850 (EXW34_21275) dnaG 4102075..4103877 (-) 1803 WP_002015179.1 DNA primase -
  EXW34_RS20855 - 4103959..4104102 (-) 144 WP_162836445.1 hypothetical protein -
  EXW34_RS20860 (EXW34_21285) - 4104767..4105579 (-) 813 WP_002015180.1 pyruvate, water dikinase regulatory protein -
  EXW34_RS20865 (EXW34_21290) - 4105609..4106241 (-) 633 WP_002015181.1 helix-turn-helix transcriptional regulator -
  EXW34_RS20870 (EXW34_21295) recO 4106348..4107094 (-) 747 WP_002190696.1 DNA repair protein RecO Machinery gene
  EXW34_RS20875 (EXW34_21300) - 4107128..4107271 (-) 144 WP_000883924.1 YqzL family protein -
  EXW34_RS20880 (EXW34_21305) era 4107448..4108353 (-) 906 WP_002088672.1 GTPase Era -
  EXW34_RS20885 (EXW34_21310) - 4108346..4108744 (-) 399 WP_002015184.1 cytidine deaminase -
  EXW34_RS20890 (EXW34_21315) - 4108844..4109197 (-) 354 WP_002190697.1 diacylglycerol kinase family protein -
  EXW34_RS20895 (EXW34_21320) ybeY 4109194..4109664 (-) 471 WP_002088675.1 rRNA maturation RNase YbeY -
  EXW34_RS20900 (EXW34_21325) - 4109661..4111805 (-) 2145 WP_002015188.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28684.22 Da        Isoelectric Point: 8.0516

>NTDB_id=346839 EXW34_RS20870 WP_002190696.1 4106348..4107094(-) (recO) [Bacillus mycoides strain JAS391]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASYIIELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=346839 EXW34_RS20870 WP_002190696.1 4106348..4107094(-) (recO) [Bacillus mycoides strain JAS391]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAGCCGAAGAGTCGGTTAGCAGCTATTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATATATTATTGAATTAACCGATAAAGCAACAGAAGATAAGAAGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAGCAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTTGATTTACACCGGCTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGACGAATATTGTGGGATTTATTTGAAAACAAGGCGTTTTTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.87

99.597

0.556

Multiple sequence alignment