Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   SSUBM407_RS08970 Genome accession   NC_012926
Coordinates   1815806..1817596 (-) Length   596 a.a.
NCBI ID   WP_012775689.1    Uniprot ID   A0A0H3N676
Organism   Streptococcus suis BM407     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810806..1822596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUBM407_RS08950 (SSUBM407_1732) - 1811604..1812506 (-) 903 WP_002938141.1 ABC transporter permease -
  SSUBM407_RS08955 (SSUBM407_1733) opp4B 1812520..1813476 (-) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  SSUBM407_RS08960 (SSUBM407_1734) - 1813478..1814419 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  SSUBM407_RS08965 (SSUBM407_1735) - 1814422..1815420 (-) 999 WP_012775688.1 ABC transporter ATP-binding protein -
  SSUBM407_RS08970 (SSUBM407_1736) oppA 1815806..1817596 (-) 1791 WP_012775689.1 oligopeptide ABC transporter substrate-binding protein Regulator
  SSUBM407_RS08975 (SSUBM407_1737) pbp3 1817809..1819050 (+) 1242 WP_012775690.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SSUBM407_RS08980 (SSUBM407_1738) sufB 1819303..1820718 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  SSUBM407_RS08985 (SSUBM407_1740) sufU 1821068..1821508 (-) 441 WP_012775691.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65707.78 Da        Isoelectric Point: 4.6364

>NTDB_id=34683 SSUBM407_RS08970 WP_012775689.1 1815806..1817596(-) (oppA) [Streptococcus suis BM407]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDILMFGYDGERKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLESSYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESEKITA
VNKRVKSYDTKYGSASGTGLAYEGIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=34683 SSUBM407_RS08970 WP_012775689.1 1815806..1817596(-) (oppA) [Streptococcus suis BM407]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCGGCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCTTGGGTATCTCCTACAACTTCATCAGGTCTTTTAATTGATGAGTTGACTGAGAATACTACTGATTCAACA
TTTGGTGGTATGGTTGATATTTTAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTAAAAGGCAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCGATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAT
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGGCCGTGGAAG
ATTAAGGAAATCGTCAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATCGCAGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATTTTGGTAAATATGACGAAGCAGCTGGTAAGAACGTTATGGATGAAAATGCCAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTAAGTCATTATACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGTGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGGCCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACGTTTGAGTCAGAAAAAATTACTGCT
GTTAATAAACGTGTGAAAAGCTATGATACAAAATACGGCTCAGCTTCGGGTACAGGTCTTGCTTATGAGGGTATCGAATT
GACAGCTGATAAGGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N676

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

99.664

100

0.997

Multiple sequence alignment