Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW34_RS07975 Genome accession   NZ_CP036102
Coordinates   1554213..1554815 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain JAS391     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549213..1559815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW34_RS07955 (EXW34_08055) dnaD 1549504..1550211 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  EXW34_RS07960 (EXW34_08060) nth 1550227..1550874 (+) 648 WP_002030794.1 endonuclease III -
  EXW34_RS07965 (EXW34_08065) - 1550878..1551396 (+) 519 WP_002189007.1 YpoC family protein -
  EXW34_RS07970 (EXW34_08070) - 1551423..1554146 (-) 2724 WP_002189009.1 penicillin-binding protein 1A -
  EXW34_RS07975 (EXW34_08075) recU 1554213..1554815 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  EXW34_RS07980 (EXW34_08080) - 1554919..1555944 (+) 1026 WP_002030803.1 DUF2515 domain-containing protein -
  EXW34_RS31260 - 1556288..1556434 (-) 147 WP_306302660.1 phage portal protein -
  EXW34_RS07985 (EXW34_08085) - 1556553..1556795 (+) 243 WP_002030820.1 hypothetical protein -
  EXW34_RS07990 (EXW34_08090) - 1556811..1557155 (+) 345 WP_002011864.1 YppE family protein -
  EXW34_RS07995 (EXW34_08095) - 1557181..1557372 (-) 192 WP_002030817.1 YppF family protein -
  EXW34_RS08000 (EXW34_08100) - 1557550..1558164 (+) 615 WP_002189013.1 YppG family protein -
  EXW34_RS08005 (EXW34_08105) - 1558321..1558758 (+) 438 WP_002189016.1 CotD family spore coat protein -
  EXW34_RS08010 (EXW34_08110) - 1558815..1559369 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -
  EXW34_RS08015 (EXW34_08115) gpsB 1559467..1559802 (+) 336 WP_000622426.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=346825 EXW34_RS07975 WP_002030800.1 1554213..1554815(-) (recU) [Bacillus mycoides strain JAS391]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346825 EXW34_RS07975 WP_002030800.1 1554213..1554815(-) (recU) [Bacillus mycoides strain JAS391]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment