Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW34_RS06610 Genome accession   NZ_CP036102
Coordinates   1300462..1300785 (-) Length   107 a.a.
NCBI ID   WP_002188849.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS391     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295462..1305785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW34_RS06585 (EXW34_06695) - 1295573..1296859 (+) 1287 WP_002188841.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW34_RS06590 (EXW34_06700) sipW 1297066..1297635 (+) 570 WP_002188842.1 signal peptidase I SipW -
  EXW34_RS06595 (EXW34_06705) - 1297697..1298287 (+) 591 WP_002188843.1 TasA family protein -
  EXW34_RS06600 (EXW34_06710) - 1298520..1299374 (+) 855 WP_215601408.1 DUF4047 domain-containing protein -
  EXW34_RS06605 (EXW34_06715) calY 1299786..1300379 (+) 594 WP_002188847.1 biofilm matrix protein CalY -
  EXW34_RS06610 (EXW34_06720) sinR 1300462..1300785 (-) 324 WP_002188849.1 helix-turn-helix domain-containing protein Regulator
  EXW34_RS06615 (EXW34_06725) - 1300865..1300999 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW34_RS06620 (EXW34_06730) inhA1 1301342..1303729 (+) 2388 WP_002188852.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW34_RS06625 (EXW34_06735) - 1303900..1305267 (+) 1368 WP_002188853.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=346823 EXW34_RS06610 WP_002188849.1 1300462..1300785(-) (sinR) [Bacillus mycoides strain JAS391]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=346823 EXW34_RS06610 WP_002188849.1 1300462..1300785(-) (sinR) [Bacillus mycoides strain JAS391]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCTGGTGTCTCAAAAGAACAGTTCCGTGAATTTCTAGAATTTACACAGTGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment