Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   SAVC_RS06360 Genome accession   NC_016912
Coordinates   1278721..1279344 (-) Length   207 a.a.
NCBI ID   WP_001208762.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus VC40     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1273721..1284344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAVC_RS06335 (SAVC_05915) rpmG 1275297..1275446 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  SAVC_RS06340 (SAVC_05920) rpsN 1275900..1276169 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  SAVC_RS06345 (SAVC_05925) guaC 1276326..1277303 (+) 978 WP_000688126.1 GMP reductase -
  SAVC_RS06355 (SAVC_05930) - 1277325..1278341 (+) 1017 WP_001789887.1 CAP domain-containing protein -
  SAVC_RS06360 (SAVC_05935) dinR/lexA 1278721..1279344 (-) 624 WP_001208762.1 transcriptional repressor LexA Regulator
  SAVC_RS06365 (SAVC_05940) sosA 1279487..1279720 (+) 234 WP_000499647.1 DNA damage-induced cell division inhibitor SosA -
  SAVC_RS06370 (SAVC_05945) - 1279856..1280095 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  SAVC_RS06375 (SAVC_05950) recP/tkt 1280216..1282204 (+) 1989 WP_000481443.1 transketolase Machinery gene
  SAVC_RS06380 (SAVC_05955) - 1282482..1282724 (+) 243 WP_000246909.1 YneF family protein -
  SAVC_RS06385 - 1282711..1282809 (+) 99 WP_001789897.1 hypothetical protein -
  SAVC_RS06390 (SAVC_05960) - 1282903..1283370 (+) 468 WP_000966142.1 CcdC family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23300.52 Da        Isoelectric Point: 5.1613

>NTDB_id=34679 SAVC_RS06360 WP_001208762.1 1278721..1279344(-) (dinR/lexA) [Staphylococcus aureus subsp. aureus VC40]
MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEIVSDQTNDNINME
ETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
EEDEATVKRFYKKKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM

Nucleotide


Download         Length: 624 bp        

>NTDB_id=34679 SAVC_RS06360 WP_001208762.1 1278721..1279344(-) (dinR/lexA) [Staphylococcus aureus subsp. aureus VC40]
ATGAGAGAATTAACAAAACGACAAAGCGAAATATATAACTATATTAAACAAGTTGTTCAAACGAAAGGTTATCCGCCTAG
TGTTCGCGAAATTGGTGAAGCAGTTGGCTTAGCATCCAGTTCAACTGTTCATGGTCACCTTTCACGTCTTGAAGAAAAAG
GCTATATAAGAAGAGATCCAACGAAACCACGTGCTATAGAAATTGTAAGTGATCAAACAAATGATAATATTAATATGGAA
GAAACGATTCATGTGCCAGTTATTGGTAAAGTCACAGCAGGTGTTCCTATTACCGCAGTAGAAAATATTGAAGAATATTT
TCCATTACCTGAACACTTAACATCGACACACAATAGCGACATATTCATATTAAACGTCGTAGGCGACAGTATGATTGAGG
CTGGTATATTAGACGGAGACAAAGTAATTGTTCGCAGTCAAACCATAGCAGAAAATGGAGACATTATTGTTGCTATGACT
GAGGAAGATGAAGCAACTGTCAAACGCTTCTATAAAAAAAAAAATCGTTATCGATTACAACCTGAAAATAGTACAATGGA
GCCAATTTACCTAGACAATGTTGCTGTAATTGGGAAAGTAATTGGTTTGTACCGCGAAATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(86-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

65.854

99.034

0.652

Multiple sequence alignment