Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW48_RS21590 Genome accession   NZ_CP036101
Coordinates   4263180..4263974 (-) Length   264 a.a.
NCBI ID   WP_033658812.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS28/2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4258180..4268974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW48_RS21565 (EXW48_21880) - 4258658..4260730 (-) 2073 WP_215562093.1 sigma-54-dependent Fis family transcriptional regulator -
  EXW48_RS21570 (EXW48_21885) - 4260867..4261100 (+) 234 WP_001190196.1 DUF2627 domain-containing protein -
  EXW48_RS21575 (EXW48_21890) - 4261149..4261877 (-) 729 WP_000172569.1 glycerophosphodiester phosphodiesterase -
  EXW48_RS21580 (EXW48_21895) - 4261928..4262074 (+) 147 WP_001247671.1 YycC family protein -
  EXW48_RS21585 (EXW48_21900) - 4262314..4262877 (-) 564 WP_215562094.1 PRK06770 family protein -
  EXW48_RS21590 (EXW48_21905) spo0A 4263180..4263974 (-) 795 WP_033658812.1 sporulation transcription factor Spo0A Regulator
  EXW48_RS21595 (EXW48_21915) spoIVB 4264262..4265560 (-) 1299 WP_060488310.1 SpoIVB peptidase -
  EXW48_RS21600 (EXW48_21920) recN 4265682..4267421 (-) 1740 WP_000947735.1 DNA repair protein RecN Machinery gene
  EXW48_RS21605 (EXW48_21925) argR 4267687..4268136 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29390.02 Da        Isoelectric Point: 6.7576

>NTDB_id=346788 EXW48_RS21590 WP_033658812.1 4263180..4263974(-) (spo0A) [Bacillus wiedmannii strain JAS28/2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLNDKQPDVLVLDIIMPHLDGLAVLEKMRNIERLRQP
SVIMLTAFGQEDVTTKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=346788 EXW48_RS21590 WP_033658812.1 4263180..4263974(-) (spo0A) [Bacillus wiedmannii strain JAS28/2]
GTGGAGAAAATTAAAGTCTGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTACGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAATGATAAGCAGCCGGATGTACTTG
TTTTAGACATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGAAATATTGAAAGGCTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGACAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGCCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACTATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACTACAATAGATGGAAAACCGAAAAACTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATCGGTGTGCCTGCTCATATTAAAGGGTATATGTACTTAAGGGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTCGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.15

100

0.811

Multiple sequence alignment