Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EXW48_RS20700 Genome accession   NZ_CP036101
Coordinates   4104828..4105286 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS28/2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4099828..4110286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW48_RS20685 (EXW48_20970) - 4100490..4100726 (+) 237 WP_000283744.1 hypothetical protein -
  EXW48_RS20690 (EXW48_20980) - 4100896..4103004 (-) 2109 WP_046957435.1 polyphosphate kinase -
  EXW48_RS20695 (EXW48_20985) ppx 4103112..4104650 (-) 1539 WP_215562057.1 exopolyphosphatase -
  EXW48_RS20700 (EXW48_20990) kre 4104828..4105286 (+) 459 WP_000804864.1 YkyB family protein Regulator
  EXW48_RS20705 (EXW48_20995) - 4105318..4105980 (-) 663 WP_215562058.1 YkyA family protein -
  EXW48_RS20710 (EXW48_21000) - 4106634..4107275 (-) 642 WP_046957436.1 diguanylate cyclase -
  EXW48_RS20715 (EXW48_21005) - 4107439..4107672 (+) 234 WP_000939452.1 SPP1 phage holin family protein -
  EXW48_RS20720 (EXW48_21010) - 4107704..4108204 (-) 501 WP_046957438.1 hypothetical protein -
  EXW48_RS20725 (EXW48_21015) - 4108630..4110171 (+) 1542 WP_215562059.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=346786 EXW48_RS20700 WP_000804864.1 4104828..4105286(+) (kre) [Bacillus wiedmannii strain JAS28/2]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=346786 EXW48_RS20700 WP_000804864.1 4104828..4105286(+) (kre) [Bacillus wiedmannii strain JAS28/2]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment