Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW48_RS06705 Genome accession   NZ_CP036101
Coordinates   1349053..1349376 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS28/2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344053..1354376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW48_RS06675 (EXW48_06715) - 1344067..1344294 (+) 228 WP_000251864.1 hypothetical protein -
  EXW48_RS06680 (EXW48_06720) - 1344450..1345736 (+) 1287 WP_215562885.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW48_RS06685 (EXW48_06725) sipW 1345928..1346497 (+) 570 WP_215562886.1 signal peptidase I SipW -
  EXW48_RS06690 (EXW48_06730) - 1346560..1347147 (+) 588 WP_048545061.1 CalY family protein -
  EXW48_RS06695 (EXW48_06735) - 1347282..1348085 (+) 804 WP_215562887.1 DUF4047 domain-containing protein -
  EXW48_RS06700 (EXW48_06740) calY 1348384..1348977 (+) 594 WP_000053728.1 biofilm matrix protein CalY -
  EXW48_RS06705 (EXW48_06745) sinR 1349053..1349376 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  EXW48_RS06710 (EXW48_06750) - 1349456..1349590 (-) 135 WP_215562888.1 anti-repressor SinI family protein -
  EXW48_RS06715 (EXW48_06755) inhA1 1349932..1352319 (+) 2388 WP_215562889.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW48_RS06720 (EXW48_06760) - 1352491..1353858 (+) 1368 WP_046958249.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=346775 EXW48_RS06705 WP_000578882.1 1349053..1349376(-) (sinR) [Bacillus wiedmannii strain JAS28/2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=346775 EXW48_RS06705 WP_000578882.1 1349053..1349376(-) (sinR) [Bacillus wiedmannii strain JAS28/2]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGACACTCTACTTCATGATGAAACAACAAAGGAGAATCATTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment