Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   GII85_RS02380 Genome accession   NZ_CP045817
Coordinates   467597..468031 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain P5_B1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462597..473031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS02350 (GII85_02350) ydaD 463244..464104 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  GII85_RS02355 (GII85_02355) lyxE 464120..464623 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  GII85_RS02360 (GII85_02360) ydaF 464711..465262 (+) 552 WP_041850710.1 GNAT family protein -
  GII85_RS02365 (GII85_02365) ydaG 465340..465762 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  GII85_RS02370 (GII85_02370) amj 466268..467077 (+) 810 WP_003234394.1 lipid II flippase Amj -
  GII85_RS02375 (GII85_02375) ydzA 467122..467412 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  GII85_RS02380 (GII85_02380) lrpC 467597..468031 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  GII85_RS02385 (GII85_02385) topB 468096..470279 (+) 2184 WP_041850711.1 DNA topoisomerase III -
  GII85_RS02390 (GII85_02390) ephJ 470482..471570 (+) 1089 WP_041850712.1 hypothetical protein -
  GII85_RS02395 (GII85_02395) epsK 471551..472402 (+) 852 WP_041850713.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=346750 GII85_RS02380 WP_003246585.1 467597..468031(+) (lrpC) [Bacillus subtilis strain P5_B1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=346750 GII85_RS02380 WP_003246585.1 467597..468031(+) (lrpC) [Bacillus subtilis strain P5_B1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCCGTAGAAGATTTCATTAACAAAACATCGCCATACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment