Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   GII86_RS22035 Genome accession   NZ_CP045816
Coordinates   1295761..1296120 (-) Length   119 a.a.
NCBI ID   WP_214284255.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290761..1301120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS06745 (GII86_06745) - 1290996..1291223 (-) 228 WP_041351654.1 helix-turn-helix domain-containing protein -
  GII86_RS06750 (GII86_06750) - 1291405..1291719 (+) 315 WP_041351652.1 hypothetical protein -
  GII86_RS06755 (GII86_06755) - 1291734..1292126 (+) 393 WP_041351650.1 hypothetical protein -
  GII86_RS06760 (GII86_06760) - 1292886..1293371 (-) 486 WP_046160290.1 hypothetical protein -
  GII86_RS06765 (GII86_06765) - 1293763..1294266 (+) 504 WP_046160291.1 hypothetical protein -
  GII86_RS06770 (GII86_06770) - 1294285..1294704 (+) 420 WP_046160292.1 hypothetical protein -
  GII86_RS21875 - 1295301..1295423 (-) 123 WP_224588918.1 response regulator aspartate phosphatase I -
  GII86_RS21880 - 1295387..1295740 (-) 354 WP_187704714.1 tetratricopeptide repeat protein -
  GII86_RS22035 rapF 1295761..1296120 (-) 360 WP_214284255.1 hypothetical protein Regulator
  GII86_RS06780 (GII86_06780) yjcS 1296227..1296544 (+) 318 WP_080480846.1 putative quinol monooxygenase -
  GII86_RS06785 (GII86_06785) - 1296659..1296976 (+) 318 WP_033881593.1 hypothetical protein -
  GII86_RS06790 (GII86_06790) manR 1297284..1299230 (+) 1947 WP_046160293.1 mannose transport/utilization transcriptional regulator ManR -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 14238.24 Da        Isoelectric Point: 4.9468

>NTDB_id=346727 GII86_RS22035 WP_214284255.1 1295761..1296120(-) (rapF) [Bacillus subtilis strain P5_B2]
MYLFRTRDLVIALTYYREAEKYLDLLDKNANTDKAEFYFKMSEVYYYMKETHFSMNYAQRAYSIFKEQKDAQGNLTYGKE
MVQCQFVIFGNLLDKMRYEDALETAEKALYDAIKIGDNI

Nucleotide


Download         Length: 360 bp        

>NTDB_id=346727 GII86_RS22035 WP_214284255.1 1295761..1296120(-) (rapF) [Bacillus subtilis strain P5_B2]
ATGTATCTTTTTAGAACGAGAGATTTAGTTATTGCTTTAACATATTATCGCGAAGCCGAAAAATATCTTGATTTATTAGA
TAAGAACGCAAATACAGATAAGGCAGAGTTCTATTTCAAAATGTCAGAAGTCTATTACTATATGAAAGAGACTCATTTTT
CAATGAATTATGCCCAGCGAGCATACTCTATATTTAAAGAACAAAAAGATGCTCAGGGGAACCTTACATATGGCAAGGAA
ATGGTCCAATGTCAGTTTGTTATCTTTGGGAACTTGCTAGATAAAATGCGTTATGAGGACGCTTTAGAAACAGCTGAAAA
AGCCTTATATGATGCTATAAAAATAGGGGACAACATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

40.741

90.756

0.37
  rapC Bacillus subtilis subsp. subtilis str. 168

42.574

84.874

0.361

Multiple sequence alignment