Detailed information NTG0346680

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GII86_RS13560
• Genome accession: NZ_CP045816
• Coordinates: 2522547..2523674 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain P5_B2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2517547..2528674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GII86_RS13540 (GII86_13540)	-	2517594..2517806 (-)	213	Protein_2650	recombinase family protein	-
GII86_RS13545 (GII86_13545)	fumC	2518025..2519413 (-)	1389	WP_046160621.1	class II fumarate hydratase	-
GII86_RS13550 (GII86_13550)	-	2519580..2520470 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
GII86_RS13555 (GII86_13555)	-	2521412..2521807 (+)	396	WP_046160622.1	VOC family protein	-
GII86_RS13560 (GII86_13560)	rapC	2522547..2523674 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
GII86_RS22350 (GII86_13565)	-	2523856..2525782 (+)	1927	Protein_2655	T7SS effector LXG polymorphic toxin	-
GII86_RS13570 (GII86_13570)	-	2525796..2526083 (+)	288	WP_014480331.1	hypothetical protein	-
GII86_RS13575 (GII86_13575)	-	2526486..2526926 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
GII86_RS13580 (GII86_13580)	-	2527025..2527477 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
GII86_RS13585 (GII86_13585)	cdiI	2527574..2527933 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
GII86_RS13590 (GII86_13590)	-	2528038..2528517 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=346680 GII86_RS13560 WP_014480328.1 2522547..2523674(-) (rapC) [Bacillus subtilis strain P5_B2]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=346680 GII86_RS13560 WP_014480328.1 2522547..2523674(-) (rapC) [Bacillus subtilis strain P5_B2]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397