Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW54_RS07700 Genome accession   NZ_CP036094
Coordinates   1485821..1486423 (-) Length   200 a.a.
NCBI ID   WP_000155588.1    Uniprot ID   A0A2C5K6J7
Organism   Bacillus toyonensis strain JAS22/1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1480821..1491423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW54_RS07680 (EXW54_07815) dnaD 1481160..1481867 (+) 708 WP_000728536.1 DNA replication protein DnaD -
  EXW54_RS07685 (EXW54_07820) nth 1481883..1482530 (+) 648 WP_000933024.1 endonuclease III -
  EXW54_RS07690 (EXW54_07825) - 1482534..1483052 (+) 519 WP_097999722.1 YpoC family protein -
  EXW54_RS07695 (EXW54_07830) - 1483076..1485754 (-) 2679 WP_098812391.1 PBP1A family penicillin-binding protein -
  EXW54_RS07700 (EXW54_07835) recU 1485821..1486423 (-) 603 WP_000155588.1 Holliday junction resolvase RecU Machinery gene
  EXW54_RS07705 (EXW54_07840) - 1486527..1487552 (+) 1026 WP_088055502.1 DUF2515 domain-containing protein -
  EXW54_RS30435 - 1487717..1487896 (-) 180 WP_079519189.1 phage portal protein -
  EXW54_RS07710 (EXW54_07845) - 1487982..1488224 (+) 243 WP_001252045.1 hypothetical protein -
  EXW54_RS07715 (EXW54_07850) - 1488240..1488584 (+) 345 WP_000455491.1 YppE family protein -
  EXW54_RS07720 (EXW54_07855) - 1488611..1488802 (-) 192 WP_000242658.1 YppF family protein -
  EXW54_RS07725 (EXW54_07860) - 1488980..1489456 (+) 477 WP_215575711.1 YppG family protein -
  EXW54_RS07730 (EXW54_07865) - 1489614..1490057 (+) 444 WP_000546286.1 spore coat protein -
  EXW54_RS07735 (EXW54_07870) - 1490114..1490668 (+) 555 WP_000869384.1 DUF1273 domain-containing protein -
  EXW54_RS07740 (EXW54_07875) gpsB 1490766..1491101 (+) 336 WP_000622427.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23289.64 Da        Isoelectric Point: 9.6725

>NTDB_id=346678 EXW54_RS07700 WP_000155588.1 1485821..1486423(-) (recU) [Bacillus toyonensis strain JAS22/1]
MTIRYPNGKRYNQASLPPKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGVAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NNGGRKSITKEEIEVHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346678 EXW54_RS07700 WP_000155588.1 1485821..1486423(-) (recU) [Bacillus toyonensis strain JAS22/1]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACAATCAAGCTTCACTACCTCCTAAAACACCAATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACGGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAGGAAACAAAAAACAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAGTTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTCGATGCGAAACATATTATTGCATTTTGGAACCGTCAA
AATAATGGTGGGCGTAAGTCAATTACTAAAGAAGAAATAGAAGTGCATGGATCATTGTTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C5K6J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment