Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW54_RS06335 Genome accession   NZ_CP036094
Coordinates   1234117..1234440 (-) Length   107 a.a.
NCBI ID   WP_000578873.1    Uniprot ID   A0A2B5EZM0
Organism   Bacillus toyonensis strain JAS22/1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229117..1239440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW54_RS06310 (EXW54_06455) - 1229366..1230652 (+) 1287 WP_000247036.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW54_RS06315 (EXW54_06460) sipW 1230847..1231416 (+) 570 WP_000767788.1 signal peptidase I SipW -
  EXW54_RS06320 (EXW54_06465) - 1231479..1232066 (+) 588 WP_000172853.1 CalY family protein -
  EXW54_RS06325 (EXW54_06470) - 1232187..1233020 (+) 834 WP_185778007.1 DUF4047 domain-containing protein -
  EXW54_RS06330 (EXW54_06475) calY 1233448..1234041 (+) 594 WP_000053720.1 biofilm matrix protein CalY -
  EXW54_RS06335 (EXW54_06480) sinR 1234117..1234440 (-) 324 WP_000578873.1 helix-turn-helix domain-containing protein Regulator
  EXW54_RS06340 (EXW54_06485) - 1234520..1234654 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  EXW54_RS06345 (EXW54_06490) inhA1 1235000..1237387 (+) 2388 WP_001035956.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW54_RS06350 (EXW54_06495) - 1237545..1238912 (+) 1368 WP_000028364.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12389.26 Da        Isoelectric Point: 9.6238

>NTDB_id=346676 EXW54_RS06335 WP_000578873.1 1234117..1234440(-) (sinR) [Bacillus toyonensis strain JAS22/1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEARLDSEWTQLV
KDAMNSGVSKEQFREFLEFTQWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=346676 EXW54_RS06335 WP_000578873.1 1234117..1234440(-) (sinR) [Bacillus toyonensis strain JAS22/1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAGGAAGCTCGCCTAGACTCCGAATGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAGTGGAAGAAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5EZM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.807

100

0.701

Multiple sequence alignment