Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EXW54_RS00530 Genome accession   NZ_CP036094
Coordinates   97674..99050 (+) Length   458 a.a.
NCBI ID   WP_097854464.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS22/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92674..104050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW54_RS00510 (EXW54_00520) ctsR 92871..93332 (+) 462 WP_001244560.1 transcriptional regulator CtsR -
  EXW54_RS00515 (EXW54_00525) - 93503..94051 (+) 549 WP_000128388.1 UvrB/UvrC motif-containing protein -
  EXW54_RS00520 (EXW54_00530) - 94056..95120 (+) 1065 WP_098835242.1 protein arginine kinase -
  EXW54_RS00525 (EXW54_00535) clpC 95143..97578 (+) 2436 WP_000971171.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  EXW54_RS00530 (EXW54_00540) radA 97674..99050 (+) 1377 WP_097854464.1 DNA repair protein RadA Machinery gene
  EXW54_RS00535 (EXW54_00545) disA 99054..100127 (+) 1074 WP_000392164.1 DNA integrity scanning diadenylate cyclase DisA -
  EXW54_RS00540 (EXW54_00550) - 100289..101392 (+) 1104 WP_000919680.1 PIN/TRAM domain-containing protein -
  EXW54_RS00545 (EXW54_00555) ispD 101409..102089 (+) 681 WP_000288308.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EXW54_RS00550 (EXW54_00560) ispF 102206..102682 (+) 477 WP_080326879.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49927.61 Da        Isoelectric Point: 6.9054

>NTDB_id=346662 EXW54_RS00530 WP_097854464.1 97674..99050(+) (radA) [Bacillus toyonensis strain JAS22/1]
MAKRKTKFICQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQTEVTKPRRLTEVETKSEARIETEFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRVIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=346662 EXW54_RS00530 WP_097854464.1 97674..99050(+) (radA) [Bacillus toyonensis strain JAS22/1]
ATGGCTAAAAGGAAAACGAAATTTATATGTCAAGAATGTGGTTATCAGTCACCGAAATATATGGGTAAATGTCCCGGATG
TGGTCAATGGAATACACTTGTTGAAGAGATGGAACCAGTTGTATCATCAAGGCGCCTTAATTACGCGAATGCAATTCAAA
CGGAAGTAACAAAACCAAGACGTCTTACTGAAGTAGAAACAAAGTCTGAGGCACGTATTGAAACGGAATTTCAAGAGTTT
AACCGTGTGCTTGGTGGCGGAATTGTAGATGGGTCCTTAGTACTTATTGGTGGAGACCCTGGGATTGGAAAATCAACATT
ACTATTACAGATTTCATCGCAATTAGCAGATTCTTCATATGATGTATTATACATATCGGGTGAGGAGTCGGCAAAGCAGA
TTAAACTTCGTGCAGATCGTTTGCATGTAAAGGGTAGCAATCTATTTGTTGTAGCAGAGACAGATCTGCAGCGTATTGCA
GCACATATTGAAGAAATGAATCCAGCTTTTGTTGTTATTGATTCTATTCAAACGATACATTTACCTGAAGTGACGTCAGC
ACCAGGAAGTGTGGCACAAGTACGTGAATGCACAGCGGAATTAATGAAACTTGCAAAAACAAAAGGAATCCCTATTTTCA
TCGTCGGGCATGTGACAAAAGAAGGAGCAATTGCAGGACCTCGTATGTTAGAACATATGGTCGATGCAGTTCTCTACTTT
GAGGGAGATCGACACCATACGTATCGTATTTTACGAGCTGTGAAGAACCGTTTTGGTTCCACGAATGAAATGGGTATCTT
TGAAATGAAAGAGCTTGGTCTTGCGGAAGTTTTAAATCCTTCTGAAATCTTCCTTGAGGAAAGGCCGGTTGGTGTTGCAG
GGTCAACAGTAGTTGCTTCAATGGAAGGAACAAGACCGGTTTTAGTAGAAATACAAGCTTTAATCTCCCCTACTAGTTTT
GGAAATCCTCGAAGAATGGCGACGGGAATTGATCATAACCGTGTTTCGCTTATTATGGCAGTATTAGAAAAAAGAACAGG
CTTACTATTGCAAAATCAAGATGCATATTTAAAAGTAGCTGGTGGTTTGAAATTAGATGAACCGGCAATTGATTTAGCAG
TGGCTTTAAGTATAGCCTCAAGTTTTAGGGATAAATCTACGGCACCAACCGATGCAGTAATAGGAGAAGTAGGATTAACT
GGAGAAATAAGAAGAGTATCAAGAATCGAACAACGTGTACAAGAAGCGGCTAAATTAGGATTTCAACGTGTTATTATTCC
TAGAAAAAACTTAGGAGGATGGACAATTCCAGATGGGATTGAGGTTGTAGGTGTTTCTAATTTAGGAGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.946

100

0.751
  radA Streptococcus pneumoniae Rx1

64.018

98.908

0.633
  radA Streptococcus pneumoniae D39

64.018

98.908

0.633
  radA Streptococcus pneumoniae R6

64.018

98.908

0.633
  radA Streptococcus pneumoniae TIGR4

64.018

98.908

0.633
  radA Streptococcus mitis SK321

64.018

98.908

0.633
  radA Streptococcus mitis NCTC 12261

63.797

98.908

0.631

Multiple sequence alignment