Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EXW29_RS20095 Genome accession   NZ_CP036090
Coordinates   3973389..3973847 (+) Length   152 a.a.
NCBI ID   WP_097879212.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS13/1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3968389..3978847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW29_RS20080 (EXW29_20470) - 3969052..3969288 (+) 237 WP_000283739.1 hypothetical protein -
  EXW29_RS20085 (EXW29_20475) - 3969457..3971565 (-) 2109 WP_087969768.1 polyphosphate kinase -
  EXW29_RS20090 (EXW29_20480) - 3971683..3973212 (-) 1530 WP_000661381.1 Ppx/GppA family phosphatase -
  EXW29_RS20095 (EXW29_20485) kre 3973389..3973847 (+) 459 WP_097879212.1 YkyB family protein Regulator
  EXW29_RS20100 (EXW29_20490) - 3973879..3974541 (-) 663 WP_097954287.1 YkyA family protein -
  EXW29_RS20105 (EXW29_20495) - 3975187..3975840 (-) 654 WP_000680808.1 diguanylate cyclase -
  EXW29_RS20110 (EXW29_20500) - 3976004..3976237 (+) 234 WP_000939445.1 SPP1 phage holin family protein -
  EXW29_RS20115 (EXW29_20505) - 3976269..3976769 (-) 501 WP_097954288.1 hypothetical protein -
  EXW29_RS20120 (EXW29_20510) - 3977204..3978745 (+) 1542 WP_097954289.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17769.46 Da        Isoelectric Point: 10.6181

>NTDB_id=346638 EXW29_RS20095 WP_097879212.1 3973389..3973847(+) (kre) [Bacillus toyonensis strain JAS13/1]
MKPSQPQSQLQNPHPINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYYFHIPPTKEDFRNLPHLGHLESSYRNPKTTLSLTVSKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=346638 EXW29_RS20095 WP_097879212.1 3973389..3973847(+) (kre) [Bacillus toyonensis strain JAS13/1]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCCACATCCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCCAAAGCTGCAACTAACCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAGCGTTTAATCGCCGAAA
AAAAAGCAATTAAAGAAGGATTACATTTCTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGGTTA
GGCGATTATTATTTCCACATCCCTCCTACGAAAGAAGATTTTCGAAACCTACCACATCTTGGTCATCTTGAATCCTCCTA
CCGAAACCCGAAAACAACCTTGTCTTTAACAGTTTCCAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGCCGCACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

65.487

74.342

0.487

Multiple sequence alignment