Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW46_RS24280 Genome accession   NZ_CP036085
Coordinates   4719220..4719507 (-) Length   95 a.a.
NCBI ID   WP_000648281.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS12/5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4714220..4724507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW46_RS24250 (EXW46_24810) - 4714475..4714822 (+) 348 WP_002202297.1 DUF4257 domain-containing protein -
  EXW46_RS24255 (EXW46_24815) - 4714907..4715131 (+) 225 WP_002012407.1 hypothetical protein -
  EXW46_RS24260 (EXW46_24820) - 4715317..4716492 (-) 1176 WP_131245714.1 MFS transporter -
  EXW46_RS24265 (EXW46_24825) - 4716542..4717477 (-) 936 WP_131245716.1 aldo/keto reductase -
  EXW46_RS24270 (EXW46_24830) - 4717585..4717893 (+) 309 WP_001259916.1 helix-turn-helix transcriptional regulator -
  EXW46_RS24275 (EXW46_24835) - 4717934..4718884 (-) 951 WP_131245718.1 serine protease -
  EXW46_RS24280 (EXW46_24840) abrB 4719220..4719507 (-) 288 WP_000648281.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW46_RS24285 (EXW46_24845) - 4719627..4721507 (-) 1881 WP_131245720.1 FtsX-like permease family protein -
  EXW46_RS24290 (EXW46_24850) nadE 4721778..4722596 (+) 819 WP_131245722.1 ammonia-dependent NAD(+) synthetase -
  EXW46_RS24295 (EXW46_24855) - 4722641..4723102 (-) 462 WP_002130989.1 NUDIX hydrolase -
  EXW46_RS24300 (EXW46_24860) - 4723130..4723330 (-) 201 WP_002141377.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10662.43 Da        Isoelectric Point: 5.8623

>NTDB_id=346606 EXW46_RS24280 WP_000648281.1 4719220..4719507(-) (abrB) [Bacillus mycoides strain JAS12/5]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=346606 EXW46_RS24280 WP_000648281.1 4719220..4719507(-) (abrB) [Bacillus mycoides strain JAS12/5]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAAAAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

95.789

0.547

Multiple sequence alignment