Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GII86_RS03950 Genome accession   NZ_CP045816
Coordinates   763620..764750 (+) Length   376 a.a.
NCBI ID   WP_017695616.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 758620..769750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS03925 (GII86_03925) - 758819..759124 (-) 306 WP_046160159.1 hypothetical protein -
  GII86_RS03930 (GII86_03930) - 759131..760900 (-) 1770 WP_235360716.1 T7SS effector LXG polymorphic toxin -
  GII86_RS03935 (GII86_03935) - 761067..761405 (+) 339 WP_029726615.1 hypothetical protein -
  GII86_RS03940 (GII86_03940) - 761418..762338 (+) 921 WP_046160160.1 DUF5655 domain-containing protein -
  GII86_RS03945 (GII86_03945) - 762444..763457 (+) 1014 WP_046160161.1 hypothetical protein -
  GII86_RS03950 (GII86_03950) rapC 763620..764750 (+) 1131 WP_017695616.1 response regulator aspartate phosphatase RapH Regulator
  GII86_RS03955 (GII86_03955) phrH 764740..764913 (+) 174 WP_038828348.1 phosphatase RapH inhibitor PhrH -
  GII86_RS03960 (GII86_03960) yeeI 765071..765790 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GII86_RS03965 (GII86_03965) - 765924..766352 (+) 429 WP_046160162.1 hypothetical protein -
  GII86_RS03970 (GII86_03970) yezE 766466..767050 (+) 585 WP_046160163.1 TetR/AcrR family transcriptional regulator -
  GII86_RS03975 (GII86_03975) yesE 767130..767573 (+) 444 WP_038828344.1 nuclear transport factor 2 family protein -
  GII86_RS03980 (GII86_03980) yesF 767570..768435 (+) 866 Protein_739 NAD-dependent epimerase/dehydratase family protein -
  GII86_RS03985 (GII86_03985) cotJA 768565..768813 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  GII86_RS03990 (GII86_03990) cotJB 768797..769060 (+) 264 WP_003219491.1 spore coat protein CotJB -
  GII86_RS03995 (GII86_03995) cotJC 769075..769644 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.35 Da        Isoelectric Point: 5.8599

>NTDB_id=346605 GII86_RS03950 WP_017695616.1 763620..764750(+) (rapC) [Bacillus subtilis strain P5_B2]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=346605 GII86_RS03950 WP_017695616.1 763620..764750(+) (rapC) [Bacillus subtilis strain P5_B2]
TTGAGTCAAGCCATACCGTCTTCGCGTGTGGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAGCCTTACGGGAATCGCCCTACAGTGACA
GAACTTTTGGAAACAATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.318

100

0.404

Multiple sequence alignment