Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EXW46_RS12990 Genome accession   NZ_CP036085
Coordinates   2519363..2520109 (+) Length   248 a.a.
NCBI ID   WP_131246328.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS12/5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2514363..2525109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW46_RS12960 (EXW46_13195) - 2514652..2516796 (+) 2145 WP_016120818.1 HD family phosphohydrolase -
  EXW46_RS12965 (EXW46_13200) ybeY 2516793..2517263 (+) 471 WP_002088675.1 rRNA maturation RNase YbeY -
  EXW46_RS12970 (EXW46_13205) - 2517260..2517613 (+) 354 WP_002190697.1 diacylglycerol kinase family protein -
  EXW46_RS12975 (EXW46_13210) - 2517713..2518111 (+) 399 WP_002015184.1 cytidine deaminase -
  EXW46_RS12980 (EXW46_13215) era 2518104..2519009 (+) 906 WP_002088672.1 GTPase Era -
  EXW46_RS12985 (EXW46_13220) - 2519186..2519329 (+) 144 WP_000883924.1 YqzL family protein -
  EXW46_RS12990 (EXW46_13225) recO 2519363..2520109 (+) 747 WP_131246328.1 DNA repair protein RecO Machinery gene
  EXW46_RS12995 (EXW46_13230) - 2520216..2520848 (+) 633 WP_002015181.1 helix-turn-helix transcriptional regulator -
  EXW46_RS13000 (EXW46_13235) - 2520878..2521690 (+) 813 WP_002015180.1 pyruvate, water dikinase regulatory protein -
  EXW46_RS13005 - 2522355..2522498 (+) 144 WP_162836445.1 hypothetical protein -
  EXW46_RS13010 (EXW46_13245) dnaG 2522580..2524382 (+) 1803 WP_131246329.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28691.22 Da        Isoelectric Point: 7.7711

>NTDB_id=346594 EXW46_RS12990 WP_131246328.1 2519363..2520109(+) (recO) [Bacillus mycoides strain JAS12/5]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKRHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTILNTYYDEYCGIYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=346594 EXW46_RS12990 WP_131246328.1 2519363..2520109(+) (recO) [Bacillus mycoides strain JAS12/5]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAGCCGAAGAGTCGGTTAGCAGCTATTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTATCGAATTAACCGATAAAGCAACAGAAGATAAGAGGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCACCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAACAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTTGATTTACACCGGCTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAATATTGAATACATATTATGACGAATATTGTGGAATTTATTTGAAAACAAGGCGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

54.656

99.597

0.544

Multiple sequence alignment